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JAL-3746 update the example corefile for jalviewjs

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    ./jalviewjs/classlists/jvexamplefile.txt
JAL-3594 added BG and UoD logo and banner to splashscreens, and adjusted status text box

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    ./channels/default/images/jalview_getdown_background_initialising.png
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    ./channels/release/images/jalview_getdown_background_initialising.png
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    ./channels/test-release/images/jalview_test-release_getdown_background_initialising.png
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JAL-3521 'Debian-safe' version of minimal build.gradle and patch. Using existing doc/*.html and build_properties from source tarball.

JAL-3521 Created a patch file to transform build.gradle into debian_build.gradle

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    ./debian/build_gradle.patch
JAL-3521 working minimal build.gradle for debian and 2.11.2. Flexmark plugin might be a problem

JAL-3521 not quite working minimal build.gradle for debian and 2.11.2

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    ./debian/debian_build.gradle
JAL-3829 upgrade Jmol to 14.31.53, SwingJS-JSMol to 14.31.54 and SwingJS to 3.3.1

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JAL-3851 run the eclipse compiled jalview

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    ./eclipse/eclipse_run.sh
JAL-3851 eclipse_run.sh

JAL-3848 update jalview core with slivka classes, example file import and structure view

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    ./jalviewjs/classlists/jalview.txt
JAL-3848 Update slivka client javajs library.

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    ./jalviewjs/libjs/slivka-client-site.zip
JAL-3848 j2s 3.2.10-v1 slivka-java-client jslib

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    ./jalviewjs/libjs/slivka-client-site.zip
JAL-3848 nominal build of slivka 0.8 compatible java client library

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    ./jalviewjs/libjs/slivka-client-site.zip
JAL-3594 Updated the Jalview Develop getdown splashscreen image with Geoff's license free photo

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    ./channels/develop/images/jalview_develop_getdown_background_error.png
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    ./channels/develop/images/jalview_develop_getdown_background_initialising.png
JAL-3830 Improved jalview.bat to find either pwsh.exe or powershell.exe, and give better messages to the user

JAL-3830 BAT file wrapper around powershell, so jalview works in command prompt. Added install4j option for installer to add Jalview's bin dir to Path in Windows. Added install4j option to create symlink to bash script to user's local bin (first of ~/bin, ~/.local/bin, ~/local/bin, ~/opt/bin that exists. First two of these usually automatically in PATH).

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    ./getdown/bin/jalview.bat
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    ./install4j/install4j8_template.install4j
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JAL-3830 Follow all SymbolicLinks in Windows powershell wrapper

JAL-3830 delete channel.props and channel.propsv when uninstalling

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    ./install4j/install4j8_template.install4j
JAL-3830 Moved wrappers to bin/jalview.* and make a symlink bin/jalview. Install4j script now jalviewg

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    ./getdown/bin/jalview.ps1
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    ./getdown/bin/jalview.sh
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    ./install4j/install4j8_template.install4j
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JAL-3594 Making default .jalview_properties file separate. Now .jalview_nonrelease_properties

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    ./channels/default/resources/channel.props
JAL-3830 Allow paths to start with '~'. Make path check more succinct.

JAL-3830 Now using a single universal bash script (jalviewc) for bash in linux, macos, cygwin and WSL. It keeps things together.

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    ./install4j/install4j8_template.install4j
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JAL-3830 add the windows bash script to getdown files and install4j installers

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    ./install4j/install4j8_template.install4j
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JAL-3830 bash script that works in both cygwin and WSL (Windows Subsystem for Linux)

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    ./getdown/jalviewc-windows
JAL-3830 Delete wrapper scripts and getdown *v files when uninstalling

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    ./install4j/install4j8_template.install4j
JAL-3830 powershell wrapper tested on linux, macos and windows including spaces in paths. This is the way.

JAL-3830 minor fix in powershell wrapper

JAL-3830 powershell follows symlinks as they do exist in NTFS, and of course in linux

JAL-3830 Powershell wrapper now works cross-platform. Who needs bash?!

JAL-3830 Make wrapper scripts executable

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    ./install4j/install4j8_template.install4j