jalview

Clone Tools

Stats

Commits this week: 0
Total Committers: 73
Last Commit:
Commits this week: 0

Lines of code count not available

Commit Activity

Commits By Day In Week
52 week commits volume
Commits By Day In Week
Commits by day
Commits By Day In Week
Commits by hour
Commits By Hour In Day
Commit calendar
 

Most active committers (90 days)

loading
loading
  • last updated a few seconds ago
All Commits Reviews
Constraints
Constraints: committers
 
Constraints: files
Constraints: dates
Thursday 21 Jan 2021
11:42 pm

Ben Soares

JAL-3805 Remove Uninstall Old Jalview.app in Release_2_11_1_Branch

Options
    • -7
    • +1
    /build.gradle
    • -74
    • +0
    /utils/install4j/Uninstall Old Jalview.app/Contents/Info.plist
    • binary
    /utils/install4j/Uninstall Old Jalview.app/Contents/MacOS/applet
    • -1
    • +0
    /utils/install4j/Uninstall Old Jalview.app/Contents/PkgInfo
    • binary
    /utils/install4j/Uninstall Old Jalview.app/Contents/Resources/Scripts/main.scpt
    • binary
    /utils/install4j/Uninstall Old Jalview.app/Contents/Resources/applet.icns
    • binary
    /utils/install4j/Uninstall Old Jalview.app/Contents/Resources/applet.rsrc
    • -5
    • +0
    /utils/install4j/Uninstall Old Jalview.app/Contents/Resources/description.rtfd/TXT.rtf
    • -177
    • +0
    /utils/install4j/Uninstall Old Jalview.app/Contents/_CodeSignature/CodeResources
    • binary
    /utils/install4j/Uninstall Old Jalview.scpt
    • -15
    • +1
    /utils/install4j/install4j8_template.install4j
5:18 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-3038 corrected code that reads editable JComboBox text input

Options
    • -3
    • +3
    /src/jalview/gui/Desktop.java
3:44 pm

Mateusz Warowny

Merge branch 'feature/JAL-3690_callback-based-web-services' into alpha/JAL-3066_Jalview_212_slivka-integration

Options
    • -10
    • +26
    /src/jalview/ws/slivkaws/SlivkaWSInstance.java
Tuesday 19 Jan 2021
5:29 pm

Mateusz Warowny

JAL-3690 AlignCalcManager - add full support for oneshot workers

Options
    • -87
    • +124
    /src/jalview/workers/AlignCalcManager2.java
5:29 pm

Mateusz Warowny

JAL-3690 AlignCalcManager - add full support for oneshot workers

Options
    • -87
    • +124
    /src/jalview/workers/AlignCalcManager2.java
4:10 pm

Mateusz Warowny

JAL-3690 AACon ws menu entry fix.

Options
    • -1
    • +3
    /src/jalview/ws/slivkaws/SlivkaAnnotationServiceInstance.java
4:10 pm

Mateusz Warowny

JAL-3690 AACon ws menu entry fix.

Options
    • -1
    • +3
    /src/jalview/ws/slivkaws/SlivkaAnnotationServiceInstance.java
Monday 18 Jan 2021
4:50 pm

Mateusz Warowny

JAL-3690 Allow unregistered workers to be run with CalcManager.

Options
    • -5
    • +10
    /src/jalview/workers/AlignCalcManager2.java
4:50 pm

Mateusz Warowny

JAL-3690 Allow unregistered workers to be run with CalcManager.

Options
    • -5
    • +10
    /src/jalview/workers/AlignCalcManager2.java
4:50 pm

Mateusz Warowny

JAL-3690 Fix typo in enum name in slivka client.

Options
    • binary
    /j11lib/slivka-client.jar
    • -1
    • +1
    /src/jalview/ws/slivkaws/SlivkaWSInstance.java
4:50 pm

Mateusz Warowny

JAL-3690 Fix typo in enum name in slivka client.

Options
    • binary
    /j11lib/slivka-client.jar
    • -1
    • +1
    /src/jalview/ws/slivkaws/SlivkaWSInstance.java
    • binary
    /utils/jalviewjs/libjs/slivka-client-site.zip
12:51 pm

Mateusz Warowny

Merge remote-tracking branch 'origin/merge/Jalview-JS/develop_feature/JAL-3690_callback-based-web-services' into feature/JAL-3690_callback-based-web-services

Options
Friday 15 Jan 2021
6:21 pm

Mateusz Warowny

JAL-3690 Fixed slivka wsmenu categories.

Options
    • -5
    • +5
    /src/jalview/ws/slivkaws/SlivkaAnnotationServiceInstance.java
    • -2
    • +3
    /src/jalview/ws/slivkaws/SlivkaMsaServiceInstance.java
    • -33
    • +51
    /src/jalview/ws/slivkaws/SlivkaWSDiscoverer.java
    • -1
    • +1
    /src/jalview/ws/slivkaws/SlivkaWSInstance.java
6:21 pm

Mateusz Warowny

JAL-3690 Fixed slivka wsmenu categories.

Options
    • -5
    • +5
    /src/jalview/ws/slivkaws/SlivkaAnnotationServiceInstance.java
    • -2
    • +3
    /src/jalview/ws/slivkaws/SlivkaMsaServiceInstance.java
    • -34
    • +47
    /src/jalview/ws/slivkaws/SlivkaWSDiscoverer.java
    • -1
    • +1
    /src/jalview/ws/slivkaws/SlivkaWSInstance.java
Thursday 14 Jan 2021
5:39 pm

Jalview Development Admin <jalview-dev-owner@jalview.org>

JAL-3796 update signature for uninstaller on OSX

Options
    • binary
    /utils/install4j/Uninstall Old Jalview.app/Contents/MacOS/applet
3:34 pm

Jalview Development Admin <jalview-dev-owner@jalview.org>

JAL-3796 update to Install4j 8.0.10 and add config for code notarization

Options
    • -1
    • +13
    /build.gradle
    • -0
    • +2
    /gradle.properties
    • -2
    • +23
    /utils/install4j/install4j8_template.install4j
Monday 11 Jan 2021
9:30 pm

Ben Soares

JAL-3789 Use j2s.config.altfileproperty in .j2s for alternative temporary build/jalviewjs/config/j2s settings file when running a headless build in gradle

Options
    • -4
    • +37
    /build.gradle
    • -1
    • +13
    /gradle.properties
9:30 pm

Ben Soares

JAL-3789 Use j2s.config.altfileproperty in .j2s for alternative temporary build/jalviewjs/config/j2s settings file when running a headless build in gradle

Options
    • -4
    • +37
    /build.gradle
    • -1
    • +14
    /gradle.properties
9:28 pm

Ben Soares

JAL-3789 New swingjs for Java2Script 3.2.10 with j2s.config.altfileproperty

Options
    • -8
    • +0
    /swingjs/README.txt
    • binary
    /swingjs/SwingJS-site.zip
    • binary
    /swingjs/net.sf.j2s.core-j11.jar
    • binary
    /swingjs/net.sf.j2s.core.jar
    • -1
    • +1
    /swingjs/timestamp
    • -0
    • +10
    /swingjs/ver/3.2.10-j11/DEV_NOTES.txt
    • binary
    /swingjs/ver/3.2.10-j11/SwingJS-site.zip
    • -0
    • +412
    /swingjs/ver/3.2.10-j11/_j2sclasslist.txt
    • -0
    • +1541
    /swingjs/ver/3.2.10-j11/differences.txt
    • binary
    /swingjs/ver/3.2.10-j11/net.sf.j2s.core-j11.jar
    • -0
    • +1
    /swingjs/ver/3.2.10-j11/timestamp
    • -0
    • +10
    /swingjs/ver/3.2.10/DEV_NOTES.txt
    • binary
    /swingjs/ver/3.2.10/SwingJS-site.zip
    • -0
    • +412
    /swingjs/ver/3.2.10/_j2sclasslist.txt
    • -0
    • +1541
    /swingjs/ver/3.2.10/differences.txt
  16. … 24 more files in changeset.
9:28 pm

Ben Soares

JAL-3789 New swingjs for Java2Script 3.2.10 with j2s.config.altfileproperty

Options
    • -8
    • +0
    /swingjs/README.txt
    • binary
    /swingjs/SwingJS-site.zip
    • -0
    • +1541
    /swingjs/differences.txt
    • binary
    /swingjs/net.sf.j2s.core-j11.jar
    • binary
    /swingjs/net.sf.j2s.core.jar
    • -1
    • +1
    /swingjs/timestamp
    • -0
    • +10
    /swingjs/ver/3.2.10-j11/DEV_NOTES.txt
    • binary
    /swingjs/ver/3.2.10-j11/SwingJS-site.zip
    • -0
    • +412
    /swingjs/ver/3.2.10-j11/_j2sclasslist.txt
    • -0
    • +1541
    /swingjs/ver/3.2.10-j11/differences.txt
    • binary
    /swingjs/ver/3.2.10-j11/net.sf.j2s.core-j11.jar
    • -0
    • +1
    /swingjs/ver/3.2.10-j11/timestamp
    • -0
    • +10
    /swingjs/ver/3.2.10/DEV_NOTES.txt
    • binary
    /swingjs/ver/3.2.10/SwingJS-site.zip
    • -0
    • +412
    /swingjs/ver/3.2.10/_j2sclasslist.txt
  16. … 32 more files in changeset.
5:08 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-3117 raise AlignFrame or SplitFrame when Overview clicked

Options
    • -15
    • +33
    /src/jalview/gui/AlignFrame.java
    • -50
    • +63
    /src/jalview/gui/AlignmentPanel.java
    • -5
    • +5
    /src/jalview/gui/ViewSelectionMenu.java
    • -14
    • +14
    /src/jalview/jbgui/GAlignFrame.java
    • -1
    • +1
    /test/jalview/gui/FreeUpMemoryTest.java
Friday 08 Jan 2021
4:53 pm

Ben Soares

JAL-3419 improved look of tabs

Options
    • -1
    • +9
    /src/jalview/bin/Jalview.java
4:06 pm

Jim Procter

JAL-3794 X and N are counted as DNA characters, but we also check how many Ns - if there were no real nucleotide characters we always return protein for poly-asparagine

Options
    • -8
    • +35
    /src/jalview/util/Comparison.java
4:06 pm

Jim Procter

JAL-3794 X and N are counted as DNA characters, but we also check how many Ns - if there were no real nucleotide characters we always return protein for poly-asparagine

Options
    • -8
    • +35
    /src/jalview/util/Comparison.java
4:05 pm

Jim Procter

JAL-3794 new test for recognition of protein or DNA with ambiguity characters, including the ‘all N’ case (that should be protein..).

Options
    • -0
    • +17
    /test/jalview/datamodel/SequenceTest.java
4:05 pm

Jim Procter

JAL-3794 new test for recognition of protein or DNA with ambiguity characters, including the ‘all N’ case (that should be protein..).

Options
    • -0
    • +17
    /test/jalview/datamodel/SequenceTest.java
12:02 pm

Ben Soares

JAL-3416 Added FlatLightLaf, use with -Dlaf=flat property

Options
    • binary
    /j11lib/flatlaf-0.46.jar
    • -3
    • +16
    /src/jalview/bin/Jalview.java
Tuesday 29 Dec 2020
4:38 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-3788 synchronize concurrent findColour() and alignmentChanged()

Options
    • -6
    • +6
    /src/jalview/schemes/ClustalxColourScheme.java
4:38 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-3788 synchronize concurrent findColour() and alignmentChanged()

Options
    • -6
    • +6
    /src/jalview/schemes/ClustalxColourScheme.java
Saturday 26 Dec 2020
8:51 am

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-3761 more consistent parameter naming

Options
    • -22
    • +22
    /src/jalview/util/MapList.java