jalview

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JAL-3289 New getdown splashscreens to be used with different getdown channels

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    /utils/getdown/jalview_logo_background_fade-640x480.xcf
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    /utils/getdown/jalview_logo_background_getdown-ARCHIVE-640x480.png
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    /utils/getdown/jalview_logo_background_getdown-BUILD-640x480.png
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    /utils/getdown/jalview_logo_background_getdown-DEVELOP-640x480.png
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    /utils/getdown/jalview_logo_background_getdown-LOCAL-640x480.png
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    /utils/getdown/jalview_logo_background_getdown-NON-RELEASE-640x480.png

changeset discussion

  1. Jim Procter: Hi Ben Soares - maybe nicer to have these generated by the getdown launcher in the future ? Worth an issue perhaps ?
  2. Ben Soares: Would be nicer. Currently the getdown-launcher is agnostic of which CHANNEL the Jalview version it's in was created w...
reconciled with applet

reconciled with develop

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    /src/jalview/gui/FeatureTypeSettings.java
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    /src/jalview/io/BackupFilenameParts.java
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    /test/jalview/io/BackupFilesTest.java
comments only

reconciled with applet

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    • +155
    /src/jalview/bin/ApplicationSingletonProvider.java
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    /src/jalview/bin/Cache.java
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    /src/jalview/gui/Preferences.java
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    /src/jalview/jbgui/GPreferences.java
3253 reconciled with develop

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    /src/jalview/bin/Cache.java
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    /src/jalview/gui/Preferences.java
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    /src/jalview/io/BackupFiles.java
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    /src/jalview/io/BackupFilesPresetEntry.java
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    /src/jalview/io/IntKeyStringValueEntry.java
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    /src/jalview/jbgui/GPreferences.java
JAL-3253 Platform reconciled with applet

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    /src/jalview/util/Platform.java
JAL-3253 reconciled with Jalview-JS/develop (cosmetic changes)

JAL-3253 reconciled with Jalview-JS/develop

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    /src/jalview/util/Platform.java
JAL-3253 removing old .cvsIgnore not in develop

JAL-3253 SwingJS upgrade including J11 transpiler 3.2.9.v1f

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    /swingjs/ver/3.2.9/SwingJS-site.zip
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    /swingjs/ver/3.2.9/net.sf.j2s.core-j11.jar
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    /swingjs/ver/3.2.9/net.sf.j2s.core.jar
JAL-3253 merge of new SwingJS api

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    /src/swingjs/api/JSUtilI.java
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    /src/swingjs/api/js/HTML5Applet.java
JAL-3585 Focus lost when closing menu -- SwingJS-siste.zip only

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    /swingjs/ver/3.2.9/SwingJS-site.zip
JAL-3588 Auto insert of Examples folder into DMG and an attempt to style both the Volume icon and the Examples folder icon (icons not working)

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    /utils/install4j/DMG.VolumeIcon.icns
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    /utils/install4j/examples_folder.png
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    /utils/install4j/jalview_macos_examples_folder_icon
JAL-3588 DnD fails; JAL-3587 Jalview project file loading fails

SwingJS fixes:

- DropTarget should access Component.peer directly, not via getPeer()

- Fast JavaScript Map must switch to slow Java Map when any key is

checked that is not a string literal.

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    /swingjs/ver/3.2.9/SwingJS-site.zip
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    /swingjs/ver/3.2.9/net.sf.j2s.core.jar
JAL-3253

sets setting for "unlikely argument type for collection" to warning; I

have set my workspace to error, but clearly it had not been like that,

because it found three errors. But now setting it to warning so that it

is not bothering me.

JAL-3592 logic question

JAL 3591 simple coding error in appletgui/SeqPanel

merge from develop: the fixy bit

merge from develop: the rest of the changes

merge from develop: Most of the changes

JAL-3589 (old Platform) fix for Jalvew-JS/develop only.

JAL-3210 fudge for JalviewJS to avoid IntervalStore incompatibility

JAL-3577 improvement to non-release DMG background and source SVG. Updated docs on image specification/creation.

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    /utils/install4j/DMG_background_image_creation_README.md
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    /utils/install4j/jalview_dmg_background-NON-RELEASE.png
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    /utils/install4j/jalview_dmg_background-NON-RELEASE.svg
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    /utils/install4j/jalview_dmg_background_blur_layers-NON-RELEASE.svg
Merge branch 'bug/JAL-247autoIdWidthSeqMarker' into develop

Merge branch 'task/JAL-3577_Jalview_Test_installers' into develop

JAL-3577 Added DEVELOP DMG styling. Improved TEST-RELEASE and NON-RELEASE styling

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    /utils/install4j/DS_Store-DEVELOP
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    /utils/install4j/DS_Store-NON-RELEASE
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    /utils/install4j/jalview_dmg_background-DEVELOP.png
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    /utils/install4j/jalview_dmg_background-NON-RELEASE.png
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    /utils/install4j/jalview_dmg_background-TEST.png
JAL-3577 Fixed Jalview Programme Group in Windows menu. Added examples folder for RELEASE channel only and Examples folder in Jalview Programme Group in Windows.

Merge branch 'develop' into releases/Release_2_11_1_Branch

JAL-3407 redact java 8 incompatible type inference