jalview

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JAL-3718 Fixed getdown auto-update. This commit Getdown jars and version files.

    • binary
    /getdown/lib/getdown-launcher-local.jar
JAL-3718 fixed getdown auto-update for future updates. Getdown Jars and version files.

    • binary
    /getdown/lib/getdown-launcher-local.jar
JAL-3718 fixed getdown auto-update for future updates. Getdown src files only

JAL-3675 typo in release notes :(

JAL-3675 update release date and release notes for JAL-3732

Merge branch 'develop' of https://source.jalview.org/git/jalview into develop

JAL-3718 force re-initialise of getdown.txt file when new getdown.txt downloaded from appbase. getdown jar and version files

    • binary
    /getdown/lib/getdown-launcher-local.jar
JAL-3718 force re-initialise of getdown.txt file when new getdown.txt downloaded from appbase. getdown src files

JAL-3718 force re-initialise of getdown.txt file when new getdown.txt downloaded from appbase. getdown src files

Merge branch 'feature/JAL-3615gzipXfam' into develop

JAL-3746 bump release version for 2.11.2 series (currently on develop)

JAL-3744 this obvious attempt to detect/gunzip file input for jalviewjs fails

JAL-2422 comments updated re ALTLOC handling

JAL-3576 unit test for preserving order of colocated features

JAL-3679 Added externally specified plugins dir to J2sPlugin check

JAL-3679 Added externally specified plugins dir to J2sPlugin check

JAL-3679 Added externally specified plugins dir to J2sPlugin check

Merge branch 'develop' of https://source.jalview.org/git/jalview into develop

JAL-3576 IntervalStore updated to v1.2

    • binary
    /j11lib/intervalstore-v1.2.jar
    • binary
    /j8lib/intervalstore-v1.2.jar
    • -59
    • +68
    /test/jalview/io/vcf/VCFLoaderTest.java
JAL-3675 update release date and release notes for JAL-3280

Merge branch 'improvement/JAL-3280_Migrate_the_VersionChecker_service_to_build_properties' into releases/Release_2_11_1_Branch

JAL-3675 whats new, logging and release notes tidying for 2.11.1.1.

JAL-3676 rework logging docs.

Merge branch 'bug/JAL-3718_Getdown_does_not_autoupdate_correctly' into releases/Release_2_11_1_Branch

JAL-3676 remove mention of Castor

JAL-3675 tweak release notes for JAL-3667, JAL-3702

JAL-3675 update sequence fetcher service documentation for JAL-3692 (ENA Flatfile) and refreshed links for other endpoints.

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    • +25
    /help/help/html/features/seqfetch.html
JAL-3280 Test for remote release build_properties file version check

    • -0
    • +2
    /test/jalview/bin/testProps.jvprops
JAL-3280 Test for remote release build_properties file version check

    • -0
    • +2
    /test/jalview/bin/testProps.jvprops
JAL-3280 fixes after CR-JAL-241. Now only checking release build_properties.