jalview

Clone Tools
  • last updated a few seconds ago
Constraints
Constraints: committers
 
Constraints: files
Constraints: dates
JAL-3026 JavaScript tests moved to utils/test

    • -0
    • +137
    /utils/test/JalviewJSTest.java
JAL-3049 JAL-3032 tidy/i18n code, remove redundant tooltip registration

Conflicts:

resources/lang/Messages.properties

resources/lang/Messages_es.properties

src/jalview/gui/FeatureSettings.java

    • -1
    • +8
    /resources/lang/Messages_es.properties
JAL-3049 JAL-3032 tidy/i18n code, remove redundant tooltip registration

    • -0
    • +1
    /resources/lang/Messages_es.properties
JAL-3085 spike - will need to cherrypick from this branch

    • -0
    • +14
    /src/jalview/jbgui/GAlignFrame.java
Merge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git into Jalview-BH/JAL-3026

JAL-3026 GD #118 tooltip not showing for components.

    • binary
    /swingjs/ver/3.2.2/SwingJS-site.zip
Merge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git into Jalview-BH/JAL-3026

JAL-3026 Boolean upgrade to Java 8

    • binary
    /swingjs/ver/3.2.2/SwingJS-site.zip
Merge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git into Jalview-BH/JAL-3026

Conflicts:

swingjs/SwingJS-site.zip

swingjs/timestamp

swingjs/ver/3.2.2/SwingJS-site.zip

swingjs/ver/3.2.2/timestamp

    • binary
    /swingjs/ver/3.2.2/SwingJS-site.zip
JAL-3026 GD#137 Boolean upgrade requires build-site.xml only

    • binary
    /swingjs/ver/3.2.2/SwingJS-site.zip
JAL-3026 GD#137 Boolean upgrade requires build-site.xml only

    • binary
    /swingjs/ver/3.2.2/SwingJS-site.zip
Merge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git into Jalview-BH/JAL-3026

JAL-3027 GD#140 checkbox/radio text alignment not coded in JSRadioButtonUI - requires build-site.xml

    • binary
    /swingjs/ver/3.2.2/SwingJS-site.zip
Merge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git into Jalview-BH/JAL-3026

JAL-3032 MCview package renamed mc_view in test classes

    • -1
    • +1
    /test/jalview/ext/jmol/JmolParserTest.java
    • -2
    • +2
    /test/jalview/ws/sifts/SiftsClientTest.java
    • -0
    • +93
    /test/mc_view/AtomTest.java
    • -0
    • +54
    /test/mc_view/BondTest.java
    • -0
    • +435
    /test/mc_view/PDBChainTest.java
    • -0
    • +336
    /test/mc_view/PDBfileTest.java
    • -0
    • +66
    /test/mc_view/ResidueTest.java
Merge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git into Jalview-BH/JAL-3026

JAL-3026 fixes Jmol going into debug mode

much faster PDB file processing if it doesn't print every line as it

goes!

    • binary
    /swingjs/ver/3.2.2/SwingJS-site.zip
JAL-2717 corrected i18n of colour scheme names

    • -2
    • +1
    /src/jalview/gui/ColourMenuHelper.java
JAL-2717 corrected i18n of colour scheme names

    • -2
    • +1
    /src/jalview/gui/ColourMenuHelper.java
JAL-3026 fixes ?j2strace=xxx message, user.home, error msg in ItentifiersUrlProvider

    • -10
    • +11
    /src/jalview/urls/IdentifiersUrlProvider.java
    • binary
    /swingjs/ver/3.2.2/SwingJS-site.zip
JAL-3032 JAL-3084 test class for JS layout bug(s)

    • -0
    • +84
    /utils/JalviewJSTest.java
JAL-3026 JSONObject: removing annotation sensing

    • -86
    • +86
    /srcjar/org/json/JSONObject.java
swingjs.JSSAXParser working for Jalview

    • binary
    /swingjs/ver/3.2.2/SwingJS-site.zip
JAL-3026 JmolData running; new run time and transpiler.

Run build-site.xml and possibly do a clean build.

    • binary
    /swingjs/ver/3.2.2/SwingJS-site.zip
    • binary
    /swingjs/ver/3.2.2/net.sf.j2s.core.jar
mc_view references were MCview

    • -1
    • +1
    /src/jalview/appletgui/APopupMenu.java
    • -1
    • +1
    /src/jalview/appletgui/AlignFrame.java
    • -1
    • +1
    /src/jalview/appletgui/AppletJmol.java
    • -1
    • +1
    /src/jalview/ext/jmol/JalviewJmolBinding.java
    • -3
    • +3
    /src/jalview/io/AppletFormatAdapter.java
    • -1
    • +1
    /src/jalview/io/PDBFeatureSettings.java
    • -2
    • +2
    /src/jalview/ws/sifts/SiftsClient.java
JAL-3026 MCview -> mc_view

SwingJS requires standard package and class capitalization;

_ added to avoid PC capitalization issue

    • -1265
    • +0
    /src/MCview/AppletPDBCanvas.java
    • -286
    • +0
    /src/MCview/AppletPDBViewer.java
    • -0
    • +1
    /src/mc_view/.cvsignore
    • -0
    • +1265
    /src/mc_view/AppletPDBCanvas.java
    • -0
    • +286
    /src/mc_view/AppletPDBViewer.java
    • -0
    • +136
    /src/mc_view/Atom.java
  1. … 7 more files in changeset.
Merge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git into Jalview-BH/JAL-3026

JAL-3026 j2sClazz.js fixes

// BH 8/20/2018 3.2.2.04 adds character.isJavaIdentifierPart$C and

several Character...$I equivalents

// BH 8/19/2018 3.2.2.04 fixes Enum .name being .$name

// BH 8/16/2018 3.2.2.04 fixes Character.toTitleCase$C,

[Integer,Long,Short,Byte].toString(i,radix)

    • binary
    /swingjs/ver/3.2.2/SwingJS-site.zip
JAL-3032 Feature Settings menu item always enabled (restored)

JAL-3032 variant of Sequence Details panel for JalviewJS