jalview

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JAL-3609 New auto-scale 'formula' for linux HiDPI. Tested to work for UHD screen in various OS display settings.

    • binary
    /getdown/lib/getdown-launcher-local.jar
    • -47
    • +79
    /src/jalview/bin/HiDPISetting.java
JAL-3609 New auto-scale 'formula' for linux HiDPI. Tested to work for UHD screen in various OS display settings.

    • binary
    /getdown/lib/getdown-launcher-local.jar
    • -47
    • +79
    /src/jalview/bin/HiDPISetting.java
JAL-3659 unnecessary duplication -- test is made in previous block

JAL-3446 unintentially left training message in code.

JAL-3648 resize annotation panel after dragging to resize graph height

    • -3
    • +16
    /src/jalview/gui/AnnotationPanel.java
JAL-3648 resize annotation panel after dragging to resize graph height

    • -3
    • +16
    /src/jalview/gui/AnnotationPanel.java
JAL-3648 resize annotation panel after dragging to resize graph height

    • -3
    • +16
    /src/jalview/gui/AnnotationPanel.java
JAL-3648 resize annotation panel after dragging to resize graph height

    • -3
    • +16
    /src/jalview/gui/AnnotationPanel.java
JAL-3662 JAL-3660 JAL-3561 source formatting

Merge branch 'cherrypicks/JAL-3660_JAL-3561_JAL-3662_cli_outputformat' into Jalview-JS/develop

JAL-3659 proper headless check; skips setProperty for JS

JAL-3662 simple fix for CLI not using right format for output of alignment.

Merge branch 'bug/JAL-3561_translatefileformats' into patch/JAL-3561_JAL-3660_fileformatexport_CLI

JAL-3660 JAL-3561 output alignment as requested file format as validated by FileFormats - report if format cannot be resolved or FileFormatI does not support export. Merged jbp patch for 2.11.1.0 to rhanson's Jalview-JS/develop reworking of args parsing

JAL-3660 JAL-3561 output alignment as requested file format as validated by FileFormats - report if format cannot be resolved or FileFormatI does not support export.

JAL-3561 JAL-3660 check resolved FileFormatI instances are equivalent to verify format is as expected in test

    • -1
    • +2
    /test/jalview/bin/CommandLineOperations.java
JAL-3561 JAL-3660 check resolved FileFormatI instances are equivalent to verify format is as expected in test

    • -1
    • +2
    /test/jalview/bin/CommandLineOperations.java
Merge branch 'Jalview-JS/develop' of https://source.jalview.org/git/jalview.git into Jalview-JS/develop

JAL-3608 formatting save only

JAL-3608 formatting save only

JAL-3446 -- YEIKS! two checkURLLinks calls!

Merge branch 'Jalview-JS/develop' of https://source.jalview.org/git/jalview.git into Jalview-JS/develop

JAL-3583 better handling of null or empty tooltip on annotation

JAL-3446 defer size calculations until panel added to window

    • -14
    • +16
    /src/jalview/gui/AlignmentPanel.java
JAL-3446 proper call for headless state

JAL-3446 CommandLineOperation test

- cleaner headless check when adding JInternalFrame to Desktop

instance.

JAL-3446 CommandLineOperation test

- headless check must be before Desktop.getInstance(), as you can't

make an instance of JFrame() when headless.

JAL-3446 CTRL-DOWN check for headless operation

JAL-3628 Changed other calls to renameTo to use BackupFiles.moveFileToFile

    • -46
    • +54
    /src/jalview/ws/sifts/SiftsClient.java
JAL-3628 Changed other calls to renameTo to use BackupFiles.moveFileToFile

    • -27
    • +35
    /src/jalview/ws/sifts/SiftsClient.java