Activity jalview/

3:55 pm

Ben Soares

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e0fdcc2
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master, JAL-3416_different_look_and_feel_on_linux and 76 more

JAL-3611 added quotation marks for appdir argument install4j uses to invoke getdown-launcher.jar

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/utils/install4j/install4j8_template.install4j
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/utils/.../install4j8_template.install4j

3:55 pm

Ben Soares

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18f75bf
changed 1 file
master, bug/JAL-3288_override_all_JInternalFrame_with_Classic_JInternalFrame and 36 more

JAL-3611 added quotation marks for appdir argument install4j uses to invoke getdown-launcher.jar

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/utils/install4j/install4j8_template.install4j
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/utils/.../install4j8_template.install4j

6:26 pm

Ben Soares

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e30f4e0
changed 4 files
Jalview-JS/update_java2script

JAL-3223 updated swingjs as of 2020-04-28

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/swingjs/SwingJS-site.zip
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/swingjs/SwingJS-site.zip
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/swingjs/net.sf.j2s.core-j11.jar
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/swingjs/net.sf.j2s.core-j11.jar
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/swingjs/net.sf.j2s.core.jar
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/swingjs/net.sf.j2s.core.jar
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/swingjs/timestamp
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/swingjs/timestamp

10:09 am

gmungoc <g.m.carstairs@dundee.ac.uk>

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26bb6eb
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master, JAL-3416_different_look_and_feel_on_linux and 94 more

Merge branch 'develop' into feature/JAL-3551Pymol

6:54 pm

Jim Procter

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3609d4b
changed 43 files
JAL-3866_RNAalifold-slivka-client, JAL-3878-ws-overhaul and 20 more

Merge branch 'develop' into alpha/JAL-3362_Jalview_212_alpha update for 2.11.1 release

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/help/help/help.jhm
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/help/help/help.jhm
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/help/help/helpTOC.xml
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/help/help/helpTOC.xml
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/resources/lang/Messages.properties
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/resources/lang/Messages.properties
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/resources/lang/Messages_es.properties
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/resources/lang/Messages_es.properties
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/src/jalview/analysis/AlignmentUtils.java
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/src/jalview/analysis/AlignmentUtils.java
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/src/jalview/appletgui/AlignFrame.java
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/src/jalview/appletgui/AlignFrame.java
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/src/jalview/bin/Jalview.java
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/src/jalview/bin/Jalview.java
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/src/jalview/datamodel/Sequence.java
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/src/jalview/datamodel/Sequence.java
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/src/jalview/gui/AlignFrame.java
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/src/jalview/gui/AlignFrame.java
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/src/jalview/gui/AlignViewport.java
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/src/jalview/gui/AlignViewport.java
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/src/jalview/gui/AnnotationLabels.java
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/src/jalview/gui/AnnotationLabels.java
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/src/jalview/gui/AssociatePdbFileWithSeq.java
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/src/jalview/.../AssociatePdbFileWithSeq.java
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/src/jalview/gui/CalculationChooser.java
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/src/jalview/gui/CalculationChooser.java
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/src/jalview/gui/Desktop.java
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/src/jalview/gui/Desktop.java
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/src/jalview/gui/EditNameDialog.java
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/src/jalview/gui/EditNameDialog.java
… 28 more files in changeset.

6:41 pm

Jim Procter

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2eea4e7
changed 0 files
JAL-3866_RNAalifold-slivka-client, JAL-3878-ws-overhaul and 20 more

Merge branch 'alpha/JAL-3066_Jalview_212_slivka-integration' into alpha/JAL-3362_Jalview_212_alpha

3:19 pm

Ben Soares

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59335e0
changed 1 file
master, JAL-3416_different_look_and_feel_on_linux and 85 more CR-JAL-236

JAL-3608 JAL-3416 Added a 'gtk' option. Not currently used unless specified as -Dlaf=gtk

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/src/jalview/bin/Jalview.java
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/src/jalview/bin/Jalview.java

8:58 pm

Ben Soares

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26f79fa
changed 1 file
master, JAL-3416_different_look_and_feel_on_linux and 127 more

JAL-3225 save auto formatting settings in org.eclipse.jdt.ui.prefs. Not yet put into place, but these settings should be used

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/utils/eclipse/org.eclipse.jdt.ui.prefs
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/utils/eclipse/org.eclipse.jdt.ui.prefs

8:45 pm

Ben Soares

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8ac2464
changed 1 file
master, JAL-3416_different_look_and_feel_on_linux and 85 more CR-JAL-236

JAL-3608 saved in Eclipse with auto formatting

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/src/jalview/bin/Jalview.java
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/src/jalview/bin/Jalview.java

8:18 pm

Ben Soares

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6312cb6
changed 4 files
master, bug/JAL-3288_override_all_JInternalFrame_with_Classic_JInternalFrame and 48 more CR-JAL-236

JAL-3608 non-JS cherry-pick

Cleaned up Look and Feel selection and enabled specific selections via "laf" property or .jalview_properties property "PREFERRED_LAF".

Default behaviour is the same as before for all platforms except Linux which will now always default to "Metal" (ignoring the property 'swing.defaultlaf=com.sun.java.swing.plaf.gtk.GTKLookAndFeel' that is set by the system in Ubuntu [and plausibly other OSes, though not Kubuntu]). If a laf property is set then this obviously gets used if possible.

Also added an optional gradle 'testLaf' property (e.g. gradle -PtestLaf=metal test) which will set the laf property during tests. Possibly handy to spot differences to test results between mac and build server (which will default to Metal).

Recognised values of "laf" are:

(specific LaFs) "metal", "gtk", "quaqua", "vaqua", "nimbus",

(best guess LaFs) "mac", "system", "crossplatform"