jalview

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SwingJS update

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    /swingjs/net.sf.j2s.core-j11.jar
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    /swingjs/ver/3.2.7/DEV_NOTES.txt
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    /swingjs/ver/3.2.7/SwingJS-site.zip
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    /swingjs/ver/3.2.7/_j2sclasslist.txt
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    /swingjs/ver/3.2.7/net.sf.j2s.core.jar
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    /swingjs/ver/3.2.7/timestamp
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    /swingjs/ver/3.2.8/DEV_NOTES.txt
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    /swingjs/ver/3.2.8/SwingJS-site.zip
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    /swingjs/ver/3.2.8/_j2sclasslist.txt
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    /swingjs/ver/3.2.8/net.sf.j2s.core.jar
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    /swingjs/ver/3.2.8/timestamp
  1. … 10 more files in changeset.
JAL-3541 ensure deletion of cloverReportDir

JAL-3541 ensure deletion of cloverReportDir

JAL-3541 small fix for clover.xml location expected by build server plugin, and comment clarity

JAL-3541 small fix for clover.xml location expected by build server plugin, and comment clarity

Merge branch 'develop' of https://source.jalview.org/git/jalview.git into develop

JAL-1889 disable test failing on build server

Merge branch 'bug/JAL-3541_cloverReport_gradle_task_fails' into develop

JAL-3541 added a property/variable style comment to build.gradle

JAL-3541 added a property/variable style comment to build.gradle

JAL-3624 log when SIFTS mapping fails

JAL-3624 log when SIFTS mapping fails

Merge branch 'feature/JAL-3624siftsInJS' into develop

JAL-1761 pattern for structure viewer construction from project file

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    /src/jalview/ext/jmol/JalviewJmolBinding.java
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    /src/jalview/ext/jmol/JmolCommands.java
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    /src/jalview/ext/pymol/PymolCommands.java
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    /src/jalview/gui/ChimeraViewFrame.java
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    /src/jalview/gui/ChimeraXViewFrame.java
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    /src/jalview/gui/PymolBindingModel.java
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    /src/jalview/gui/StructureViewer.java
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    /src/jalview/jbgui/GStructureViewer.java
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    /src/jalview/project/Jalview2XML.java
JAL-3541 selectively merged build.gradle and gradle.properties

JAL-3626 reinstate hostname when pandoccing building.md and ‘help’ group for getdowndigestdir task

JAL-3626 rescue automatic configuration of JALVIEW_VERSION from the RELEASE properties file, and exclusion of ‘examples’ from the windows installer.

JAL-3609 corrected maxdimension to mindimension. Adjusted tallscreen limit

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    /getdown/lib/getdown-launcher-local.jar
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    /src/jalview/bin/HiDPISetting.java
JAL-3609 corrected maxdimension to mindimension. Adjusted tallscreen limit

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    /getdown/lib/getdown-launcher-local.jar
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    /src/jalview/bin/HiDPISetting.java
relevant issue is JAL-3626

relevant issue is JAL-3626

JAL-3551 copy Jalview features to Pymol 'p' (with pull refactoring)

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    /resources/lang/Messages_es.properties
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    /src/jalview/ext/jmol/JalviewJmolBinding.java
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    /src/jalview/ext/jmol/JmolCommands.java
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    /src/jalview/ext/pymol/PymolCommands.java
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    /src/jalview/ext/rbvi/chimera/ChimeraCommands.java
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    /src/jalview/gui/ChimeraViewFrame.java
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    /src/jalview/gui/ChimeraXViewFrame.java
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    /src/jalview/gui/PymolBindingModel.java
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    /src/jalview/gui/StructureViewerBase.java
  1. … 6 more files in changeset.
JAL-2422 highlight ChimeraX selection (ChimeraX-1.0-rc-2020.05.21 +)

JAL-3609 removed debugging prints

JAL-3609 removed debugging prints

JAL-3626 use Viewer.scriptWait() to send Jmol commands (Bob Hanson)

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    /src/jalview/ext/jmol/JalviewJmolBinding.java
JAL-3609 changed property names to something more palatable and catered for portrait screens

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    /getdown/lib/getdown-launcher-local.jar
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    /src/jalview/bin/HiDPISetting.java
JAL-3609 changed property names to something more palatable and catered for portrait screens

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    /getdown/lib/getdown-launcher-local.jar
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    /src/jalview/bin/HiDPISetting.java
JAL-3621 corrected sequence feature sort and test

JAL-3621 corrected sequence feature sort and test

JAL-3621 corrected sequence feature sort and test