jalview

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Merge branch 'develop' into releases/Release_2_11_2_Branch

JAL-4046 release on 9th August 2022

Merge branch 'develop' into releases/Release_2_11_2_Branch

JAL-4046 JAL-3993 imports reformatting

JAL-4046 JAL-3993 patch for 2.11.2.4 release

JAL-4046 release notes for JAL-3991

Merge branch 'task/JAL-3991_check_actual_JAVA_VERSION_against_build_properties_in_application_startup' into develop

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    /resources/lang/Messages_es.properties
Merge branch 'develop' into releases/Release_2_11_2_Branch

JAL-4046 release notes for JAL-4014 - gecos colourschemes

Merge branch 'improvement/JAL-4014_gecos_colour_schemes' into develop

Merge branch 'develop' into releases/Release_2_11_2_Branch

JAL-4056 documented in release notes for JAL-4043

Merge branch 'patch/JAL-4036_uniprot_fts_legacy_endpoint' into develop

Merge branch 'develop' into releases/Release_2_11_2_Branch

JAL-4043 what’s new, updated help images and release notes for JAL-4034 (3d beacons button)

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    /help/help/html/features/3dbeacons_button.png
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    /help/help/html/features/schooser_main.png
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    /help/markdown/whatsnew/whatsnew-2_11_2_4.md
JAL-4034 show the loading spinner when switching between tabs

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    /src/jalview/gui/StructureChooser.java
Merge branch 'features/JAL-4034_improve_3dbeacons_button_and_ux' into develop

JAL-4056 fixed tl;dr section of doc/building.md

JAL-4055 quick patch to see how Jalview looks as a free-floating multiwindowed app rather than a Desktop contained app

JAL-4048 feature group filter

JAL-4036 Fixed the virus_host_id query field

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    /resources/fts/uniprot_data_columns-2022.txt
JAL-4036 Added text to help about different number and date range acceptable formats

JAL-4036 updated help about new UniProt API

JAL-4036 moved a comment block

JAL-4034 button looks better also on other OSes with the 0 vertical insets

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    /src/jalview/jbgui/GStructureChooser.java
JAL-4034 add round corners to 3DB confirmation button with icon on a mac

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    /src/jalview/jbgui/GStructureChooser.java
JAL-4036 Changes made from code review CR-JAL-265

JAL-4048 fix disappearing sequence IDs, and non-positional feature descriptions

JAL-4047 - proof of concept for JAL-4048 - display columns of info in sequence ID panel.

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    /src/jalview/api/AlignViewportI.java
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    /src/jalview/gui/AlignViewport.java
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    /src/jalview/viewmodel/seqfeatures/IdColumn.java
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    /src/jalview/viewmodel/seqfeatures/IdColumns.java
JAL-4036 Add getDbName to the GFTSPanelI and add an index code message to the index dropdown tooltip as appropriate

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    /resources/lang/Messages_es.properties
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    /src/jalview/fts/core/GFTSPanel.java