jalview

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temp push

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    /src/jalview/api/AlignFrameI.java
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    /src/jalview/api/JalviewApp.java
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    /src/jalview/appletgui/AlignFrame.java
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    /src/jalview/appletgui/EmbmenuFrame.java
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    /src/jalview/appletgui/FontChooser.java
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    /src/jalview/appletgui/OverviewPanel.java
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    /src/jalview/appletgui/ScalePanel.java
  1. … 114 more files in changeset.
reconciled with applet

reconciled with applet

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    /src/jalview/bin/ApplicationSingletonProvider.java
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    /src/jalview/bin/Cache.java
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    /src/jalview/gui/Preferences.java
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    /src/jalview/jbgui/GPreferences.java
JAL-3253 Platform reconciled with applet

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    /src/jalview/util/Platform.java
JAL-3253 SwingJS upgrade including J11 transpiler 3.2.9.v1f

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    /swingjs/ver/3.2.9/SwingJS-site.zip
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    /swingjs/ver/3.2.9/net.sf.j2s.core-j11.jar
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    /swingjs/ver/3.2.9/net.sf.j2s.core.jar
JAL-3253 merge of new SwingJS api

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    /src/swingjs/api/JSUtilI.java
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    /src/swingjs/api/js/HTML5Applet.java
merge from develop: the fixy bit

merge from develop: the rest of the changes

merge from develop: Most of the changes

JAL-3589 (old Platform) fix for Jalvew-JS/develop only.

JAL-3210 fudge for JalviewJS to avoid IntervalStore incompatibility

JAL-3577 improvement to non-release DMG background and source SVG. Updated docs on image specification/creation.

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    /utils/install4j/DMG_background_image_creation_README.md
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    /utils/install4j/jalview_dmg_background-NON-RELEASE.png
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    /utils/install4j/jalview_dmg_background-NON-RELEASE.svg
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    /utils/install4j/jalview_dmg_background_blur_layers-NON-RELEASE.svg
Merge branch 'task/JAL-3577_Jalview_Test_installers' into develop

JAL-3577 Added DEVELOP DMG styling. Improved TEST-RELEASE and NON-RELEASE styling

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    /utils/install4j/DS_Store-DEVELOP
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    /utils/install4j/DS_Store-NON-RELEASE
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    /utils/install4j/jalview_dmg_background-DEVELOP.png
    • binary
    /utils/install4j/jalview_dmg_background-NON-RELEASE.png
    • binary
    /utils/install4j/jalview_dmg_background-TEST.png
JAL-3577 Fixed Jalview Programme Group in Windows menu. Added examples folder for RELEASE channel only and Examples folder in Jalview Programme Group in Windows.

JAL-3407 redact java 8 incompatible type inference

JAL-3407 updated release date to Thursday 9th April, and release notes for JAL-3577 JAL-3581 JAL-3571

JAL-3581 no hidden sequence marker if hidden markers not shown

JAL-3581 no hidden sequence marker if hidden markers not shown

JAL-3577 Moved application Categories for freedesktop menus into correct place in install4j

Merge branch 'develop' into Jalview-JS/develop

Conflicts:

build.gradle

src/jalview/gui/SeqPanel.java

build.gradle and gradle.properties changes in develop ignored

JAL-3577 removed debugging

Merge branch 'task/JAL-3577_Jalview_Test_installers' into develop

JAL-3577 Added existing and new Application IDs for Windows. Fixed Desktop shortcut and Menu entry.

JAL-3579 no Feature Editor if features not shown

JAL-3577 Changed shortName to INTERNAL_ID

JAL-3577 Changed Windows internal ID to a new value which is backward compatible with the 2.11.0 installation. i.e. release versions will have internal ID 'Jalview'

JAL-3577 Changed Windows internal ID to a new value which is backward compatible with the 2.11.0 installation. i.e. release versions will have internal ID 'Jalview'

JAL-3577 Added DS_Store for Test release to look like proper installer

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    /utils/install4j/DS_Store-TEST-RELEASE
JAL-3577 Added a jalviewt scheme ONLY to TEST-RELEASE and TEST-LOCAL channels so that a test jvl can be made to ONLY open in the Test installation