jalview

Clone Tools
  • last updated a few seconds ago
Constraints
Constraints: committers
 
Constraints: files
Constraints: dates
JAL-3253 reconciled with Jalview-JS/develop (cosmetic changes)

JAL-3253 reconciled with Jalview-JS/develop

    • -56
    • +102
    /src/jalview/util/Platform.java
JAL-3253 removing old .cvsIgnore not in develop

JAL-3585 Focus lost when closing menu -- SwingJS-siste.zip only

    • binary
    /swingjs/ver/3.2.9/SwingJS-site.zip
JAL-3588 DnD fails; JAL-3587 Jalview project file loading fails

SwingJS fixes:

- DropTarget should access Component.peer directly, not via getPeer()

- Fast JavaScript Map must switch to slow Java Map when any key is

checked that is not a string literal.

    • binary
    /swingjs/ver/3.2.9/SwingJS-site.zip
    • binary
    /swingjs/ver/3.2.9/net.sf.j2s.core.jar
JAL-3253

sets setting for "unlikely argument type for collection" to warning; I

have set my workspace to error, but clearly it had not been like that,

because it found three errors. But now setting it to warning so that it

is not bothering me.

JAL-3592 logic question

JAL 3591 simple coding error in appletgui/SeqPanel

JAL-3253 JAL-3032 upgrade to SwingJS-3.2.9.v1e complete 2/2

- random tests failing can be ignored (just thread timing issues)

(AlignmentPanelTest and SeqCanvasTest). Problem is clearly from

concurrent thread interference not likely to affect standard

operation.

- branch can be deleted after merging.

JAL-3253 JAL-3032 upgrade to SwingJS-3.2.9.v1e complete

- random tests failing can be ignored (just thread timing issues)

(AlignmentPanelTest and SeqCanvasTest). Problem is clearly from

concurrent thread interference not likely to affect standard

operation.

- branch can be deleted after merging.

    • binary
    /swingjs/ver/3.2.9/SwingJS-site.zip
JAL-3253 JAL-3260 SwingJS-3.2.9.v1e and tests

    • -134
    • +38
    /src/jalview/gui/AlignmentPanel.java
    • -0
    • +2
    /test/jalview/gui/AlignmentPanelTest.java
Bamboo test #13

    • -41
    • +128
    /src/jalview/gui/AlignmentPanel.java
    • -3
    • +72
    /test/jalview/gui/SeqCanvasTest.java
unneeded debug message

Bamboo test #13 AlignViewport resize and jscrollbar set

removing synchronize I just added.

Bamboo stalled?

Bamboo test#12.1 adding flushEvents()

Bamboo test#12 adding flushEvents()

Bamboo test#12 reporting stack trace for ViewportRanges by EventQueue

Bamboo test #11 - adding single threaded and thread names

    • -0
    • +1
    /test/jalview/gui/AlignmentPanelTest.java
Build #8 test showing thread activity on ViewportRanges.endSeq.

Bamboo reproducibility test #2 -- only README.txt changed.

In test #1 (build #7) a new test failure occurred in

and SeqCanvasTest showed the very strange message:

SC1 15 [ViewportRange startRes=0 endRes=66 startSeq=0 endSeq=13]

indicating that between the first and the last of these few lines:

av.getRanges().setStartEndSeq(0, 3);

int h = av.getRanges().getVisibleAlignmentHeight();

String s = "";

s += " SC1 " + av.getRanges().getVisibleAlignmentHeight() + " "

+ av.getRanges();

av's range gets set to 13 instead of 3.

Bamboo reproducibility test -- only README.txt changed.

JAL-3253 JAL-3260 SeqCanvasTest.java should be working

but it makes no sense that just adding System.out messages would make it

do so. ?????

Bamboo test #5 - intentional SeqCanvasTest fail for debugging

Bamboo test #4 (possibly) - intentional SeqCanvasTest fail for debugging

testing in Bamboo; no problem locally

bamboo test

bamboo test

bamboo testing only

    • -0
    • +1
    /test/jalview/gui/AlignmentPanelTest.java
JAL-3253 SwingJS-32.9.v1e

- Platform upgrade

- SwingJS upgrade

- java2script upgrade

- test fixes for thread concurrency