jalview

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minor changes

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    /swingjs/ver/3.2.9-j11/SwingJS-site.zip
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    /swingjs/ver/3.2.9/SwingJS-site.zip
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    /test/jalview/gui/JvSwingUtilsTest.java
from develep

IdCanvas holdRepaint()

Plartform update

LocaleOrNone - MessageManager

Jalview.isInteractive()

HttpsServer singleton

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    /src/jalview/httpserver/HttpServer.java
Minor updates

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    /src/jalview/gui/AlignFrame.java
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    /src/jalview/gui/AlignmentPanel.java
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    /src/jalview/gui/AssociatePdbFileWithSeq.java
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    /swingjs/differences.txt
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    /swingjs/ver/3.2.9-j11/SwingJS-site.zip
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    /swingjs/ver/3.2.9-j11/differences.txt
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    /swingjs/ver/3.2.9/SwingJS-site.zip
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    /swingjs/ver/3.2.9/differences.txt
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    /test/jalview/gui/AlignmentPanelTest.java
preferences/StructureViewer fix

preferences/StructureViewer fix

JAL-3445 JAL-3253 BSML bbb format test data - pox virus genomes

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    /examples/testdata/10-poxgenomes.bbb
Just a rearrangement

JAL-3253-applet Preferences / StructureViewer fix

SO option true for Java (from Jalview-JS/develop)

JAL-3253-applet removes references to JalviewLite interface

no longer any need to implement the Jalview methods as an interface that

is common to JalviewLite

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    /src/jalview/bin/JalviewAppLoader.java
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    /src/jalview/bin/JalviewJSApi.java
JAL-3626 reconciled Platform

- replaces escapeString with escapeBackslashes

- adds pathEquals

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    /src/jalview/gui/ChimeraViewFrame.java
updated jmol-app.zip and SwingJS-site.zip

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    /swingjs/ver/3.2.9/SwingJS-site.zip
JAL-3626 issue #2 - Jmol not loading from JVP

- just a versioning issue with core_jvjmol

- updated jmol-app.zip

- updated SwingJS-site.zip

- buildcore.xml creates core_jvjmol.z.js

    • binary
    /swingjs/ver/3.2.9/SwingJS-site.zip
JAL-3516 SwingJS fix

- allows off-codebase loading of files within Info.j2sPath

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    /swingjs/ver/3.2.9/SwingJS-site.zip
SwingJS update

SwingJS update

    • binary
    /swingjs/ver/3.2.9/SwingJS-site.zip
updated AsyncSwingWorker

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    /src/javajs/async/AsyncSwingWorker.java
AsyncFetchTask for SequenceFetcher

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    /src/jalview/gui/SequenceFetcher.java
removing debug comment

javajs.async.AsyncSwingWorker for SequenceFetcher

- set to synchronous mode for Java due to blocking on Ensembl.

- Hmm. Could be adapted to not use the Event Queue.

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    /src/jalview/gui/SequenceFetcher.java
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    /test/jalview/io/CrossRef2xmlTests.java
JSUtilI interface

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    /src/jalview/util/Platform.java
Adding SwingJS interface and utility classes

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    /src/javajs/async/Assets.java
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    /src/javajs/async/Async.java
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    /src/javajs/async/AsyncColorChooser.java
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    /src/javajs/async/AsyncDialog.java
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    /src/javajs/async/AsyncFileChooser.java
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    /src/javajs/async/AsyncSwingWorker.java
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    /src/javajs/async/SwingJSUtils.java
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    /src/swingjs/api/Interface.java
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    /src/swingjs/api/JSFileHandler.java
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    /src/swingjs/api/JSUtilI.java
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    /src/swingjs/api/js/DOMNode.java
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    /src/swingjs/api/js/HTML5Applet.java
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    /src/swingjs/api/js/HTML5AudioContext.java
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    /src/swingjs/api/js/HTML5Canvas.java
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SwingJS upgrade

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    /swingjs/ver/3.2.9-j11/SwingJS-site.zip
    • binary
    /swingjs/ver/3.2.9/SwingJS-site.zip
MiGLayout and VARNA site zips for SwingJS 3.2.9

varna likely hashtable.remove(value) not .remove(key)

I simply made this parent.toString() to do presumably what Java would

do,

though I am not certain of that.