jalview

Clone Tools
  • last updated a few seconds ago
Constraints
Constraints: committers
 
Constraints: files
Constraints: dates
JAL-1988 JAL-3772 Test for FORCE_QUIT whilst saving a file

    • -28
    • +62
    /test/jalview/gui/QuitHandlerTest.java
JAL-1988 JAL-3772 Tests for various quitting scenarios

    • -0
    • +268
    /test/jalview/gui/QuitHandlerTest.java
    • -0
    • +7
    /test/jalview/gui/quitProps.jvprops
JAL-1988 JAL-3772 Fixes highlighted by tests

    • -10
    • +11
    /src/jalview/gui/QuitHandler.java
    • -2
    • +10
    /src/jalview/project/Jalview2XML.java
JAL-1988 JAL-3772 Allow other window closing dialogs to cancel quit handling

    • -0
    • +3
    /src/jalview/gui/StructureViewerBase.java
JAL-1988 JAL-3772 Tidying of unspecified Callable declarations. Use SwingUtilities.getAncestorOfClass()

    • -34
    • +17
    /src/jalview/gui/JvOptionPane.java
    • -31
    • +33
    /src/jalview/gui/QuitHandler.java
JAL-1988 JAL-3772 Moving packages to somewhere more obvious (jbgui -> gui)

    • -0
    • +65
    /src/jalview/gui/APQHandlers.java
    • -0
    • +403
    /src/jalview/gui/QuitHandler.java
    • -65
    • +0
    /src/jalview/jbgui/APQHandlers.java
    • -406
    • +0
    /src/jalview/jbgui/QuitHandler.java
JAL-1988 JAL-3772 Change default alignmentviewport saved status and set to true when loaded from file

JAL-1988 JAL-3772 removed a debugging log line

JAL-1988 JAL-3772 Removed 'Wait' button from waitDialog, no iterations for GUI. Added bulletpoint to files saving list. Added use of passed in button objects to modal JvOptionPane, so buttons can be controlled (e.g. setEnabled, setVisible) outside of JvOptionPane.

    • -0
    • +2
    /resources/lang/Messages_es.properties
    • -17
    • +166
    /src/jalview/gui/JvOptionPane.java
    • -62
    • +51
    /src/jalview/jbgui/QuitHandler.java
JAL-1988 JAL-3772 Fixed wait between waitDialog appearances, ensuring all files saving will quit straight away. Goodbye message to user if waitDialog still visible.

    • -120
    • +97
    /src/jalview/jbgui/QuitHandler.java
JAL-1988 Allow generic Container object in JvOptionPane showDialog. Fix dynamically saving files in the wait for save dialog

    • -0
    • +2
    /resources/lang/Messages_es.properties
    • -84
    • +24
    /src/jalview/jbgui/QuitHandler.java
Merge branch 'develop' into bug/JAL-1988_JAL-3772_improved_quit_handling

JAL-3416 (and others) increasing number of STDERR lines used for jalview.bin.CommandLineOperations tests for increased robustness

    • -1
    • +1
    /test/jalview/bin/CommandLineOperations.java
JAL-3772 silly NPE error fixed

JAL-3416 Making FlatLaF default for macs due to a problem with VAqua not starting on macs

JAL-1988 JAL-3772 wait timer working first time but blocking desktop gui updates

    • -27
    • +26
    /src/jalview/jbgui/QuitHandler.java
JAL-1988 JAL-3772 Non-blocking modal dialogs for unsaved changes and saving files. Wait timer not working. Wait dialog update/close on files saved not working.

    • -1
    • +1
    /resources/lang/Messages_es.properties
    • -6
    • +7
    /src/jalview/gui/AlignExportOptions.java
    • -183
    • +166
    /src/jalview/gui/AlignFrame.java
    • -32
    • +20
    /src/jalview/gui/AlignViewport.java
    • -34
    • +29
    /src/jalview/gui/AnnotationLabels.java
    • -159
    • +149
    /src/jalview/gui/Desktop.java
    • -29
    • +25
    /src/jalview/gui/FeatureEditor.java
    • -11
    • +5
    /src/jalview/gui/FeatureSettings.java
    • -15
    • +13
    /src/jalview/gui/ImageExporter.java
    • -112
    • +229
    /src/jalview/gui/JvOptionPane.java
  1. … 10 more files in changeset.
JAL-4065 final fix for 2.11.2.5 - 5pm BST release

JAL-4065 revised to avoid a visit from the apostrophe police

JAL-4073 update tests

    • -2
    • +2
    /test/jalview/ws/dbsources/PfamFullTest.java
    • -2
    • +2
    /test/jalview/ws/dbsources/PfamSeedTest.java
Merge branch 'develop' of https://source.jalview.org/git/jalview into develop

JAL-4073 fix PEBCAK failure

JAL-4014 Changed gecos display names to match labels in help

    • -4
    • +4
    /help/help/html/colourSchemes/index.html
JAL-4065 revised whatsNew to make sense !

JAL-4065 release 2.11.2.5 date is 11th Oct

JAL-4065 update citations for Pfam and Rfam and added the Interpro citation

    • -0
    • +7
    /help/help/html/features/seqfetch.html
JAL-4065 2.11.2.5 release version bump

JAL-4065 release notes and updated release date for 2.11.2.5

    • -0
    • +2
    /help/markdown/whatsnew/whatsnew-2_11_2_5.md
stable url for PFAM retrieval via interpro api :) JAL-4073

JAL-1551 formatting

    • -14
    • +18
    /src/jalview/ws/dbsources/Pfam.java
    • -1
    • +1
    /src/jalview/ws/dbsources/PfamFull.java
    • -1
    • +1
    /src/jalview/ws/dbsources/PfamSeed.java
    • -4
    • +5
    /test/jalview/ws/dbsources/PfamFullTest.java
    • -4
    • +5
    /test/jalview/ws/dbsources/PfamSeedTest.java