jalview

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JAL-2547 don't show features in tooltip over a gap

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    /src/jalview/appletgui/SeqPanel.java
JAL-2504 update the right feature colour when creating a new feature

JAL-2544 unit tests for sort by feature score

    • -0
    • +132
    /test/jalview/analysis/AlignmentSorterTest.java
JAL-2544 check feature overlaps selection region

Merge remote-tracking branch 'origin/bug/JAL-2256' into develop

JAL-2418 patch build - broken htsjdk import

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    /src/jalview/datamodel/CigarArray.java
JAL-2526 removed redundant call to Sequence.findPosition()

Merge branch 'bug/JAL-2388_typeCheckAlignView.getUpdatedView' into develop

JAL-2388 return empty hidden columns for fully visible alignment view

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    /src/jalview/datamodel/AlignmentView.java
JAL-2256 Corrected AllCols/Rows iterator behaviour for single element

JAL-2418 remove explicit test suite stats

Merge branch 'develop' into documentation/JAL-2418_release2102

Merge branch 'bug/JAL-2510amendFeatures' into develop

JAL-2447 add links to issues.jalview.org for experimental features

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    /help/html/features/chimera.html
Merge branch 'documentation/JAL-2418_release2102' into develop

JAL-2447 experimental section in ‘Whats New’

JAL-2447 JAL-2295 JAL-2296 documenting as experimental features

Merge branch 'develop' into documentation/JAL-2418_release2102

Merge branch 'features/JAL-2447experimentalFlag' into develop

JAL-2418 release notes

JAL-2504 use (and update) defaults for new feature only if not supplied

    • -1
    • +1
    /src/jalview/appletgui/APopupMenu.java
    • -71
    • +43
    /src/jalview/gui/FeatureRenderer.java
Merge branch 'develop' into bug/JAL-2510amendFeatures

Conflicts:

resources/lang/Messages.properties

resources/lang/Messages_es.properties

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    /resources/lang/Messages_es.properties
Merge branch 'documentation/JAL-2418_release2102' into develop

JAL-2418 release notes

JAL-384 documentation on custom colours groovy examples

JAL-384 - groovy scripts for conserved/unconserved colourscheme requests

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    /examples/groovy/colourConserved.groovy
    • -0
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    /examples/groovy/colourUnconserved.groovy
JAL-2418 release notes

JAL-2418 JAL-2316 added to new features

JAL-2316 tweaking docs and links in help

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    /help/html/webServices/urllinks.html
JAL-2418 release 2.10.2 release notes template