jalview

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JAL-2577 Don't allow viewport ranges below 0. Unit tests updated.

Merge branch 'documentation/JAL-2418_release2102' into develop

JAL-2418 release notes for JAL-2547, JAL-2563, JAL-1256

Merge branch 'JAL-2571' into develop

Merge branch 'documentation/JAL-2418_release2102' into develop

JAL-2398 - updated groovy script for direct field modification

JAL-2418 JAL-2563 release notes

Merge branch 'develop' into documentation/JAL-2418_release2102

Merge branch 'develop' of https://source.jalview.org/git/jalview into develop

JAL-2375 fix unit test to reflect improvement

    • -1
    • +1
    /test/jalview/gui/StructureChooserTest.java
Fixed failing tests

    • -3
    • +14
    /src/jalview/io/AppletFormatAdapter.java
    • -53
    • +1
    /test/jalview/ext/jmol/JmolViewerTest.java
JAL-2533 updated unit test to reflect improvement

    • -2
    • +2
    /test/jalview/ext/jmol/JmolParserTest.java
JAL-2547 handle contact features 'around' a gap correctly

JAL-2573 Fixes for alignment < viewport width, and similarly height

JAL-2547 tooltip/AmendFeatures on gap straddled by feature, not for adjacent feature

    • -14
    • +7
    /src/jalview/appletgui/APopupMenu.java
    • -56
    • +75
    /src/jalview/appletgui/SeqPanel.java
JAL-2571 Corrected alignment width/height checks to visible only

JAL-2570 don't zap group colour scheme when mapping over split frame

    • -26
    • +26
    /src/jalview/datamodel/SequenceGroup.java
Merge branch 'bug/JAL-2034contextchange' into develop

JAL-2388 release notes

Merge branch 'documentation/JAL-2418_release2102' into develop

JAL-2520 properly documented as a fixed bug in release notes

Merge branch 'documentation/JAL-2418_release2102' into develop

JAL-2465,JAL-2520,JAL-2533 release notes

Merge branch 'features/JAL-2465_No-mapping_Jmol-structures-loaded-via-url' into develop

    • -6
    • +32
    /src/jalview/ext/jmol/JalviewJmolBinding.java
    • -1
    • +1
    /src/jalview/gui/ChimeraViewFrame.java
    • -2
    • +2
    /src/jalview/gui/StructureViewerBase.java
JAL-2533 update javadoc

JAL-2465 fixed groups for JmolViewerTest.testStructureLoadingViaURL

    • -1
    • +1
    /test/jalview/ext/jmol/JmolViewerTest.java
Merge branch 'bug/JAL-2536' into develop

JAL-2536 tweak javadoc wording

Merge branch 'documentation/JAL-2418_release2102' into develop