jalview

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JAL-2665 OOM checks just in case

JAL-2665 Corrected to draw selections for wrapped printing

Merge remote-tracking branch 'origin/releases/Release_2_10_2b1_Branch' into bug/JAL-2665-2.10.2b

Conflicts:

src/jalview/gui/SeqCanvas.java

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    /src/jalview/datamodel/SequenceGroup.java
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    /src/jalview/gui/AlignmentPanel.java
JAL-2665 Changes for review comments; printing with selgroup working

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    /src/jalview/datamodel/SequenceGroup.java
JAL-2435 last lost commit e926a5d redone

Merge branch 'documentation/JAL-2675_release2102b1' into releases/Release_2_10_2_Branch

JAL-2675 typo in what's new href

Merge branch 'develop' into releases/Release_2_10_2_Branch

JAL-2675 bump version for branch to 2.10.2b1

Merge branch 'develop' into releases/Release_2_10_2_Branch

JAL-1551 formatting

JAL-2675 release notes entry for 2.10.2b1, updated what’s new and link to latest notes in help.

Merge remote-tracking branch 'origin/develop' into bug/JAL-2665

JAL-2665 Comments

JAL-2665 Refactoring (and side-effect fix for JAL-2672)

JAL-2665 tidies

JAL-2665 Code tidies

JAL-2665 Fixed wrapped mode group over >1 panel; and hidden cols

JAL-2418 ahem - correct year for what's new

JAL-2418 JAL-2116 use single j2se 7+ argumant with java 9 add-modules - seems to work on java 8 (windows, osx, linux) without 'use latest version' popup and also on java 9

JAL-2418 JAL-2116 make sure java 8,7 vm args are also listed

JAL-2665 partial fix for selection running over 2 wrapped panels

JAL-2665 Correct position of selection switching from wrap to normal

Merge branch 'develop' into releases/Release_2_10_2_Branch

Merge branch 'documentation/JAL-2418_release2102' into develop

JAL-2418 formatting

JAL-2418 occupancy row in What’s New

Merge branch 'develop' into releases/Release_2_10_2_Branch

JAL-2418 add GPL to main sources

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    /src/jalview/analysis/TreeBuilder.java
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    /src/jalview/analysis/scoremodels/ScoreModels.java
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    /src/jalview/api/analysis/ScoreModelI.java
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    /src/jalview/gui/ColourMenuHelper.java
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    /src/jalview/gui/ComboBoxTooltipRenderer.java
  1. … 23 more files in changeset.
JAL-2418 source formatting

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    /src/MCview/AppletPDBCanvas.java
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    /src/MCview/AppletPDBViewer.java
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    /src/jalview/analysis/AAFrequency.java
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    /src/jalview/analysis/AlignSeq.java
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    /src/jalview/analysis/AlignmentUtils.java
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    /src/jalview/analysis/Conservation.java
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    /src/jalview/analysis/CrossRef.java
  1. … 450 more files in changeset.