jalview

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Commits this week: 4
Total Committers: 73
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Commits this week: 4

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Wednesday 11 Oct 2017
12:12 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-2757 fix PDB also; suppress stack trace and compiler warnings

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    • -6
    • +7
    /src/jalview/fts/service/pdb/PDBFTSPanel.java
    • -7
    • +6
    /src/jalview/fts/service/uniprot/UniprotFTSPanel.java
Thursday 05 Oct 2017
6:59 pm

Jim Procter

JAL-2757 reset textbox after a non HTTP 200 response

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    • -2
    • +3
    /src/jalview/fts/service/uniprot/UniprotFTSPanel.java
Tuesday 03 Oct 2017
3:25 pm

Jim Procter

Merge branch 'releases/Release_2_10_2b1_Branch' into develop

Conflicts:

help/html/releases.html

help/html/whatsNew.html

src/jalview/ws/dbsources/Uniprot.java

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    • -1
    • +21
    /help/html/releases.html
Monday 02 Oct 2017
3:41 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-2525 lookup transcript features by Ontology

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    • -8
    • +13
    /src/jalview/ext/ensembl/EnsemblGene.java
Sunday 01 Oct 2017
12:43 pm

Jim Procter

Merge branch 'documentation/JAL-2751patch2102b2' into releases/Release_2_10_2b1_Branch

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12:42 pm

Jim Procter

JAL-2751 what's new for 2.10.2b2 patch

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    • -7
    • +10
    /help/html/whatsNew.html
12:40 pm

Jim Procter

JAL-2751 patch release notes

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    • -2
    • +3
    /help/html/releases.html
Saturday 30 Sep 2017
11:26 am

Jim Procter

JAL-2751 bump version and new releases entry

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    • -1
    • +1
    /RELEASE
    • -1
    • +26
    /help/html/releases.html
Friday 29 Sep 2017
5:00 pm

Jim Procter

Merge branch 'feature/JAL-2745ebiHttps' into develop

Options
4:48 pm

Jim Procter

JAL-2748 JAL-2745 remove uniprot from EBI fetch client test - no longer used in Uniprot fetcher

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    • -7
    • +0
    /test/jalview/ws/ebi/EBIFetchClientTest.java
4:48 pm

Jim Procter

JAL-2748 JAL-2745 remove uniprot from EBI fetch client test - no longer used in Uniprot fetcher

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    • -7
    • +0
    /test/jalview/ws/ebi/EBIFetchClientTest.java
4:48 pm

Jim Procter

JAL-2745 patch tests for https

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    • -4
    • +4
    /test/jalview/ws/ebi/EBIFetchClientTest.java
4:48 pm

Jim Procter

JAL-2745 patch tests for https

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    • -4
    • +4
    /test/jalview/ws/ebi/EBIFetchClientTest.java
4:47 pm

Jim Procter

JAL-2748 formatting

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    • -2
    • +2
    /src/jalview/ws/dbsources/Uniprot.java
4:47 pm

Jim Procter

JAL-2748 formatting

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    • -2
    • +2
    /src/jalview/ws/dbsources/Uniprot.java
4:47 pm

Jim Procter

JAL-2745 JAL-2748 direct download of XML from uniprot.org patch for 2.10.2b1 branch

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    • -11
    • +17
    /src/jalview/ws/dbsources/Uniprot.java
4:47 pm

Jim Procter

JAL-2745 JAL-2748 direct download of XML from uniprot.org

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    • -11
    • +17
    /src/jalview/ws/dbsources/Uniprot.java
11:51 am

Jim Procter

Merge branch 'feature/JAL-2745ebiHttps' into develop

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11:49 am

Jim Procter

Revert "JAL-2745 update SIFTS FTP URL to HTTPS" EBI ftp confirmed to remain accesible via HTTP This reverts commit c7f663521cb82b94d832015010fa488d3dc7ff58.

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    • -1
    • +1
    /src/jalview/ws/sifts/SiftsClient.java
11:49 am

Jim Procter

Revert "JAL-2745 update SIFTS FTP URL to HTTPS" EBI ftp confirmed to remain accesible via HTTP This reverts commit c7f663521cb82b94d832015010fa488d3dc7ff58.

Options
    • -1
    • +1
    /src/jalview/ws/sifts/SiftsClient.java
8:20 am

Jim Procter

Merge branch 'feature/JAL-2745ebiHttps' into develop

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8:18 am

Jim Procter

JAL-2745 update default EBI-eye search URL to HTTPS

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    • -1
    • +1
    /src/jalview/util/UrlConstants.java
8:18 am

Jim Procter

JAL-2745 update default EBI-eye search URL to HTTPS

Options
    • -1
    • +1
    /src/jalview/util/UrlConstants.java
8:18 am

Jim Procter

JAL-2745 update SIFTS FTP URL to HTTPS

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    • -1
    • +1
    /src/jalview/ws/sifts/SiftsClient.java
8:18 am

Jim Procter

JAL-2745 update SIFTS FTP URL to HTTPS

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    • -1
    • +1
    /src/jalview/ws/sifts/SiftsClient.java
8:03 am

Jim Procter

Merge branch 'feature/JAL-2745ebiHttps' into develop

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7:58 am

Jim Procter

JAL-2745 stderr rather than stdout for unexpected HTTP response

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    • -1
    • +1
    /src/jalview/ws/ebi/EBIFetchClient.java
7:58 am

Jim Procter

JAL-2745 stderr rather than stdout for unexpected HTTP response

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    • -1
    • +1
    /src/jalview/ws/ebi/EBIFetchClient.java
Thursday 28 Sep 2017
4:51 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-2745 update www.ebi.ac.uk to https

Options
    • -1
    • +1
    /src/jalview/fts/service/pdb/PDBFTSRestClient.java
    • -3
    • +11
    /src/jalview/ws/ebi/EBIFetchClient.java
4:51 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-2745 update www.ebi.ac.uk to https

Options
    • -1
    • +1
    /src/jalview/fts/service/pdb/PDBFTSRestClient.java
    • -3
    • +11
    /src/jalview/ws/ebi/EBIFetchClient.java