jalview

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Commits this week: 2
Total Committers: 73
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Commits this week: 2

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Friday 02 Feb 2018
2:23 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-2899 asynchronous Jmol colour updates

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    /src/jalview/ext/jmol/JalviewJmolBinding.java
Thursday 01 Feb 2018
3:16 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-2899 update structure and overview on slider drag release

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    • +7
    /src/jalview/gui/AnnotationColourChooser.java
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    /src/jalview/gui/AnnotationRowFilter.java
Wednesday 24 Jan 2018
7:36 am

Jim Procter

JAL-2858 update release date and rejig what's new message

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    /help/html/releases.html
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    /help/html/whatsNew.html
Tuesday 23 Jan 2018
1:52 pm

Jim Procter

JAL-2858 fix what's new

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    /help/html/whatsNew.html
12:03 pm

Jim Procter

JAL-2858 update latest release notes link in TOC

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    /help/help.jhm
11:57 am

Jim Procter

JAL-2859 release notes

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    /help/html/releases.html
    • -5
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    /help/html/whatsNew.html
11:54 am

Jim Procter

JAL-2858 update release notes

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    /help/html/releases.html
Monday 22 Jan 2018
3:26 pm

Jim Procter

JAL-2858 release notes for 2.10.3b1 (including revision to EnsemblGenomes client as per JAL-2679)

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    /help/html/releases.html
3:25 pm

Jim Procter

JAL-2858 bump version number for 2.10.3b1

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    /RELEASE
Thursday 18 Jan 2018
4:12 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-2810 JAL-2886 i18n

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    /resources/lang/Messages.properties
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    /resources/lang/Messages_es.properties
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    /src/jalview/fts/core/GFTSPanel.java
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    /src/jalview/gui/StructureChooser.java
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    /src/jalview/jbgui/GStructureChooser.java
2:54 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-2679 update query id to actual case of retrieved gene

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    /src/jalview/ext/ensembl/EnsemblGene.java
Wednesday 17 Jan 2018
11:37 am

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-2679 case-insensitive comparison of query and retrieved accession

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    /src/jalview/ext/ensembl/EnsemblFeatures.java
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    /src/jalview/ext/ensembl/EnsemblGene.java
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    /src/jalview/ext/ensembl/EnsemblSeqProxy.java
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    /test/jalview/ext/ensembl/EnsemblCdnaTest.java
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    /test/jalview/ext/ensembl/EnsemblGeneTest.java
Tuesday 16 Jan 2018
4:27 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-2679 use object_type=Transcript for lookup of Parent for Protein

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    /src/jalview/ext/ensembl/EnsemblCdna.java
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    /src/jalview/ext/ensembl/EnsemblGene.java
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    /src/jalview/ext/ensembl/EnsemblGenome.java
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    /src/jalview/ext/ensembl/EnsemblLookup.java
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    /src/jalview/ext/ensembl/EnsemblSeqProxy.java
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    /src/jalview/ext/ensembl/EnsemblSequenceFetcher.java
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    /src/jalview/ext/ensembl/EnsemblSymbol.java
Friday 12 Jan 2018
11:37 am

Kira Mourão

JAL-2886 trivial unit test fix

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    • +2
    /test/jalview/gui/StructureChooserTest.java
Thursday 11 Jan 2018
5:28 pm

Kira Mourão

Merge remote-tracking branch 'origin/task/JAL-2662' into develop

Conflicts:

benchmarking/README

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    /benchmarking/README
2:53 pm

Kira Mourão

JAL-2662 Updated README

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    • +26
    /benchmarking/README
Thursday 30 Nov 2017
12:04 pm

Jim Procter

JAL-2849 release notes

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    /help/html/releases.html
11:34 am

Jim Procter

Merge branch 'bug/JAL-2849' into develop

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11:34 am

Jim Procter

JAL-2849 JAL-2863 file format preferences TODO

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    /src/jalview/gui/Preferences.java
11:28 am

Jim Procter

JAL-2849 fix

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    /src/jalview/io/FormatAdapter.java
Tuesday 28 Nov 2017
3:18 pm

Jim Procter

Merge branch 'bug/JAL-2859_uniprottowrongpdbid' into develop

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3:06 pm

Jim Procter

JAL-2740 release notes

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    /help/html/releases.html
2:55 pm

Jim Procter

Merge branch 'bug/JAL-2740' into develop

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    /src/jalview/appletgui/AnnotationColumnChooser.java
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    /src/jalview/gui/AnnotationColumnChooser.java
2:53 pm

Jim Procter

JAL-2827 release notes

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    /help/html/releases.html
2:45 pm

Jim Procter

Merge branch 'bug/JAL-2827' into develop

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2:42 pm

Jim Procter

JAL-2842 release notes

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    /help/html/releases.html
2:24 pm

Jim Procter

Merge branch 'bug/JAL-2842' into develop

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    /src/jalview/gui/SeqPanel.java
Monday 27 Nov 2017
10:09 pm

Jim Procter

JAL-2859 disambiguate with PDB ID if no file path

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    /src/jalview/gui/StructureViewer.java
10:07 pm

Jim Procter

JAL-2859 failing test demonstrating sequences with pdb without a local file map all get mapped together

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    • +9
    /test/jalview/gui/StructureViewerTest.java
6:46 pm

Jim Procter

JAL-2851 JAL-2858 release notes for 2.10.3b1

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    /help/html/releases.html