jalview

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JAL-2899 asynchronous Jmol colour updates

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    /src/jalview/ext/jmol/JalviewJmolBinding.java
JAL-2899 update structure and overview on slider drag release

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    /src/jalview/gui/AnnotationColourChooser.java
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    /src/jalview/gui/AnnotationRowFilter.java
JAL-2858 update release date and rejig what's new message

JAL-2858 fix what's new

JAL-2858 update latest release notes link in TOC

JAL-2859 release notes

JAL-2858 update release notes

JAL-2858 release notes for 2.10.3b1 (including revision to EnsemblGenomes client as per JAL-2679)

JAL-2858 bump version number for 2.10.3b1

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    /resources/lang/Messages.properties
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    /resources/lang/Messages_es.properties
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    /src/jalview/gui/StructureChooser.java
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    /src/jalview/jbgui/GStructureChooser.java
JAL-2679 update query id to actual case of retrieved gene

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    /src/jalview/ext/ensembl/EnsemblGene.java
JAL-2679 case-insensitive comparison of query and retrieved accession

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    /src/jalview/ext/ensembl/EnsemblFeatures.java
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    /src/jalview/ext/ensembl/EnsemblGene.java
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    /src/jalview/ext/ensembl/EnsemblSeqProxy.java
JAL-2679 use object_type=Transcript for lookup of Parent for Protein

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    /src/jalview/ext/ensembl/EnsemblCdna.java
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    /src/jalview/ext/ensembl/EnsemblGene.java
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    /src/jalview/ext/ensembl/EnsemblGenome.java
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    /src/jalview/ext/ensembl/EnsemblLookup.java
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    /src/jalview/ext/ensembl/EnsemblSeqProxy.java
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    /src/jalview/ext/ensembl/EnsemblSymbol.java
JAL-2886 trivial unit test fix

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    /test/jalview/gui/StructureChooserTest.java
Merge remote-tracking branch 'origin/task/JAL-2662' into develop

Conflicts:

benchmarking/README

JAL-2662 Updated README

JAL-2849 release notes

Merge branch 'bug/JAL-2849' into develop

JAL-2849 JAL-2863 file format preferences TODO

Merge branch 'bug/JAL-2859_uniprottowrongpdbid' into develop

JAL-2740 release notes

Merge branch 'bug/JAL-2740' into develop

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    /src/jalview/gui/AnnotationColumnChooser.java
JAL-2827 release notes

Merge branch 'bug/JAL-2827' into develop

JAL-2842 release notes

Merge branch 'bug/JAL-2842' into develop

JAL-2859 disambiguate with PDB ID if no file path

JAL-2859 failing test demonstrating sequences with pdb without a local file map all get mapped together

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    /test/jalview/gui/StructureViewerTest.java
JAL-2851 JAL-2858 release notes for 2.10.3b1