jalview

Clone Tools

Stats

Commits this week: 2
Total Committers: 73
Last Commit:
Commits this week: 2

Lines of code count not available

Commit Activity

Commits By Day In Week
52 week commits volume
Commits By Day In Week
Commits by day
Commits By Day In Week
Commits by hour
Commits By Hour In Day
Commit calendar
 

Most active committers (90 days)

loading
loading
  • last updated a few seconds ago
All Commits Reviews
Constraints
Constraints: committers
 
Constraints: files
Constraints: dates
Tuesday 14 Aug 2018
4:55 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-3078 reset Tree font (only!) on Cancel

Options
    • -7
    • +12
    /src/jalview/gui/FontChooser.java
Thursday 19 Jul 2018
4:37 pm

Jim Procter

Merge branch 'task/JAL-3047_clovercoverage' into develop

Options
4:36 pm

Jim Procter

JAL-3047 don't set classes unconditionally (forgot to delete it in earlier patch)

Options
    • -1
    • +0
    /build.xml
Thursday 12 Jul 2018
2:17 pm

Jim Procter

Merge branch 'develop' of http://source.jalview.org/git/jalview into develop

Options
Monday 02 Jul 2018
10:24 am

Jim Procter

Merge branch 'task/JAL-3047_clovercoverage' into develop

Options
10:24 am

Jim Procter

JAL-3047 don’t let the makedist task complete if a clover build was performed

Options
    • -0
    • +3
    /build.xml
10:20 am

Jim Procter

JAL-3047 ‘cloverclasses’ build directory for instrumented classes (allow incremental compile and avoid releasing instrumented classes in production builds)

Options
    • -0
    • +2
    /build.xml
Wednesday 27 Jun 2018
6:17 pm

Jim Procter

JAL-3047 enable clover for testng

Options
    • -0
    • +4
    /build.xml
6:17 pm

Jim Procter

JAL-3047 ignore clover output dir

Options
    • -1
    • +2
    /.gitignore
6:02 pm

Jim Procter

JAL-3047 ant -Dclover.jar=../path/to/clover/lib/clover.jar to enable clover for testng ant task

Options
    • -0
    • +1
    /build.xml
Tuesday 26 Jun 2018
6:38 pm

Jim Procter

Merge branch 'task/JAL-3042_remove_SimpleDocument_dependency' into develop

Options
6:37 pm

Jim Procter

JAL-3042 remove mention of adjustable search box history length from docs

Options
    • -1
    • +1
    /help/html/editing/index.html
    • -1
    • +1
    /help/html/features/search.html
    • binary
    /help/html/features/searchclearhist.png
5:57 pm

Jim Procter

JAL-3035 removed jdas in libs documentation and noted spring modules as candidates for removal

Options
    • -3
    • +2
    /THIRDPARTYLIBS
5:07 pm

Jim Procter

Merge branch 'tasks/JAL-3035_remove_dasobert_dependency' into develop

Options
5:06 pm

Jim Procter

JAL-3035 documentation in 2.11 release notes (and 2.11 fictional release date)

Options
    • -2
    • +2
    /RELEASE
    • -0
    • +24
    /help/html/releases.html
5:06 pm

Jim Procter

JAL-3035 remove DAS UI documentation

Options
    • -2
    • +0
    /help/help.jhm
    • -4
    • +1
    /help/helpTOC.xml
    • -24
    • +0
    /help/html/features/clarguments.html
    • -77
    • +0
    /help/html/features/dasfeatures.html
    • -74
    • +0
    /help/html/features/dassettings.html
    • -4
    • +0
    /help/html/features/preferences.html
    • -4
    • +1
    /help/html/features/seqfeatures.html
    • -26
    • +4
    /help/html/features/seqfetch.html
    • -25
    • +21
    /help/html/menus/alignmentMenu.html
    • -2
    • +1
    /help/html/menus/alwview.html
    • -9
    • +8
    /help/html/menus/wsmenu.html
    • -12
    • +8
    /help/html/webServices/dbreffetcher.html
    • -9
    • +5
    /help/html/webServices/index.html
4:40 pm

Jim Procter

Merge branch 'tasks/JAL-3035_remove_dasobert_dependency' into develop

Options
4:16 pm

Jim Procter

JAL-3035 - jalview-das is no more ! - jsdas lib removed - DAS settings panel deleted (Feature settings pane has no tabs now) - all code for wrapping DAS sources and retrieving sequences and features from them is gone - test methods/main methods have been de-dasified or removed if their only purpose was to test DAS source discovery - fancy sorting code to account for DAS sequence source names has been removed

Options
    • -1
    • +0
    /.classpath
    • binary
    /lib/jdas-1.0.4.jar
    • -18
    • +0
    /src/jalview/bin/Cache.java
    • -1
    • +0
    /src/jalview/bin/Jalview.java
    • -864
    • +0
    /src/jalview/gui/DasSourceBrowser.java
    • -210
    • +0
    /src/jalview/gui/FeatureSettings.java
    • -50
    • +0
    /src/jalview/gui/JDatabaseTree.java
    • -5
    • +0
    /src/jalview/gui/Preferences.java
    • -22
    • +4
    /src/jalview/gui/SequenceFetcher.java
    • -10
    • +0
    /src/jalview/jbgui/GPreferences.java
    • -54
    • +11
    /src/jalview/ws/DBRefFetcher.java
    • -925
    • +0
    /src/jalview/ws/DasSequenceFeatureFetcher.java
    • -79
    • +7
    /src/jalview/ws/SequenceFetcher.java
    • -57
    • +0
    /src/jalview/ws/dbsources/das/api/DasSourceRegistryI.java
    • -87
    • +0
    /src/jalview/ws/dbsources/das/api/jalviewSourceI.java
  16. … 8 more files in changeset.
4:09 pm

Jim Procter

JAL-3035 (unrelated) random XML error in nbbuild.xml

Options
    • -1
    • +1
    /nbbuild.xml
3:37 pm

Jim Procter

JAL-3042 don't allow user to change default history length for an input box

Options
    • -77
    • +5
    /src/jalview/io/cache/JvCacheableInputBox.java
Thursday 07 Jun 2018
3:40 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-2755 correct Javadoc and error handling

Options
    • -2
    • +6
    /src/jalview/ext/ensembl/EnsemblLookup.java
    • -1
    • +4
    /src/jalview/ext/ensembl/EnsemblMap.java
    • -2
    • +2
    /src/jalview/ext/ensembl/EnsemblRestClient.java
Wednesday 06 Jun 2018
3:16 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-3013 ensure Chimera as a symlink gets resolved

Options
    • -21
    • +24
    /src/ext/edu/ucsf/rbvi/strucviz2/ChimeraManager.java
Monday 04 Jun 2018
8:42 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-2808 update test for revised treatment of 'mixed type' attribute values

Options
    • -2
    • +4
    /test/jalview/datamodel/features/FeatureAttributesTest.java
8:40 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-3019 correctly form toRange of 'traversed' MapList

Options
    • -2
    • +25
    /src/jalview/util/MapList.java
    • -6
    • +6
    /test/jalview/analysis/AlignmentUtilsTests.java
    • -31
    • +45
    /test/jalview/util/MapListTest.java
3:06 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-3018 updated REST versions to 6.3

Options
    • -5
    • +2
    /src/jalview/ext/ensembl/EnsemblRestClient.java
Thursday 31 May 2018
2:20 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-2808 don't capture or report min-max for mixed text/numeric attribute

Options
    • -18
    • +32
    /src/jalview/datamodel/features/FeatureAttributes.java
    • -1
    • +1
    /src/jalview/gui/FeatureTypeSettings.java
11:43 am

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-2808 pre-fill numeric inequality filter with min/max range value

Options
    • -9
    • +35
    /src/jalview/gui/FeatureTypeSettings.java
Monday 28 May 2018
9:23 am

gmungoc <g.m.carstairs@dundee.ac.uk>

Merge branch 'bug/JAL-797' into develop

Options
    • -0
    • +42
    /src/jalview/gui/Desktop.java
9:19 am

gmungoc <g.m.carstairs@dundee.ac.uk>

Merge remote-tracking branch 'origin/releases/Release_2_10_4_Branch' into develop

Conflicts:

src/jalview/io/FeaturesFile.java

Options
    • -0
    • +7
    /build.xml
    • -0
    • +1
    /resources/lang/Messages.properties
    • -2
    • +3
    /resources/lang/Messages_es.properties
    • -11
    • +29
    /src/jalview/gui/AlignFrame.java
    • -40
    • +146
    /src/jalview/gui/Desktop.java
    • -2
    • +0
    /src/jalview/io/FeaturesFile.java
    • -0
    • +20
    /test/jalview/gui/SeqCanvasTest.java
    • -0
    • +20
    /test/jalview/renderer/seqfeatures/FeatureRendererTest.java
Saturday 26 May 2018
1:36 pm

Jim Procter

JAL-2999 release date for 2.10.4b1 set for 27th May 2018

Options
    • -1
    • +1
    /help/html/releases.html