jalview

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JAL-3288 Replace all javax.swing.JInternalFrame with extended jalview.jbgui.ClassicJInternalFrame

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    /src/jalview/gui/AnnotationChooser.java
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    /src/jalview/gui/AnnotationColourChooser.java
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    /src/jalview/gui/AnnotationColumnChooser.java
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    /src/jalview/gui/AnnotationExporter.java
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    /src/jalview/gui/AnnotationRowFilter.java
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    /src/jalview/gui/CalculationChooser.java
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    /src/jalview/gui/ChimeraViewFrame.java
  1. … 26 more files in changeset.
JAL-3991 Made info displayed only when needed (Java 11+)

JAL-3991 Added information output about the slightly alarming 'WARNING: An illegal reflective access operation has occurred' error that occurs for linux users. It can't be avoided so informing the user should help with alarm levels.

JAL-3991 JAVA_COMPILE_VERSION put into build_properties. Check for possible JVM mismatch in jalview.bin.LaunchUtils. STDERR warning from jalview.bin.Launcher. Console and optional popup warning in jalview.bin.Jalview.

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    /resources/lang/Messages_es.properties
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    /src/jalview/util/LaunchUtils.java
JAL-3981 patch tests and remove errant imports

JAL-3990 gradle spotlessApply

JAL-3990 release notes for 2.11.2.1 patch release

Merge branch 'bug/JAL-3980_JAL-3981_tooltips_sequence_details' into develop

JAL-3983 release note for JAL-3985

Merge branch 'bug/JAL-3085_avoid_414_error_for_PDBFTS' into develop

JAL-3085 update tests and mock responses, new P0dtd1 testcase

JAL-3985 formatting

JAL-3985 split PDB id queries into multiple queries so server doesn’t 414

Merge branch 'patch/JAL-3976_3dbeaconsnull' into develop

JAL-3976 fix mock PDBFTS query & responses

JAL-3983 known issue note for JAL-3984

JAL-3983 release notes for JAL-3975 and known issue note for JAL-3984

Merge branch 'bug/JAL-360+JAL-3975_keyboard_input_lost_after_dialog' into develop

JAL-360 JAL-3975 update parent for text colour dialog - doesn't seem to help but we live in hope..

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    /src/jalview/gui/TextColourChooser.java
make AlignFrame the parent of FeatureEditor dialog, and have parent Component request focus after...
make AlignFrame the parent of FeatureEditor dialog, and have parent Component request focus after...
JAL-3975 forced re-focus to alignframe after Create Sequence Feature dialog.
JAL-3975 forced re-focus to alignframe after Create Sequence Feature dialog.
JAL-3983 update release notes for JAL-3973

JAL-3973 exclude the original RELEASE file so gradle doesn't complain of duplicate entries in the tarball

Merge branch 'bug/JAL-3973_source_tarball_not_building' into develop

JAL-3983 release 2.11.2.1 date and release notes

JAL-3980 defensive copy - inefficient but fixes bug

JAL-3981 Additional line breaks - sort of helps

JAL-3981 strategic newlines to help speed up Java's html parser