jalview

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JAL-3633 new getdown jars

    • binary
    /getdown/lib/getdown-launcher-local.jar
JAL-3633 refactored/simplified LaunchUtils code

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    /src/jalview/util/ChannelProperties.java
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    /src/jalview/util/LaunchUtils.java
JAL-3633 new getdown jars

    • binary
    /getdown/lib/getdown-launcher-local.jar
JAL-3633 getdown reads jalview_properties for proxy settings

JAL-3503 Changed decimal display of memory in Prefences

JAL-3594 Making default .jalview_properties file separate. Now .jalview_nonrelease_properties

JAL-3503 missed a widget being disabled

JAL-3503 New getdown version and jar files

    • binary
    /getdown/lib/getdown-launcher-local.jar
JAL-3503 Added a Startup tab in Preferences, with gui for JVMMEMMAX and JVMMEMPC settings. Allowed jalview.bin.Launcher and getdown to read/use these memory settings at launch. Added channel.props to getdown appdir, used to determing correct .jalview_properties file. Refactored MemorySetting a bit, with more helper methods for the Preferences tab.

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    /resources/lang/Messages.properties
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    /resources/lang/Messages_es.properties
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    /src/jalview/bin/LaunchUtils.java
  1. … 6 more files in changeset.
Merge branch 'task/JAL-3796_notarization' into develop

Merge branch 'develop' into task/JAL-3796_notarization

JAL-3796 minimal steps for notarization and the entitlements.txt file needed for the codesign tool

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    /utils/osx_signing/README
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    /utils/osx_signing/entitlements.txt
JAL-3618 Enable appBundleIsTraversable in JFileChooser on macOS

JAL-3594 Allow a channel to use a different preferences file than .jalview_properties, with initial read from .jalview_properties

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    • +6
    /src/jalview/util/ChannelProperties.java
JAL-3822 pass panel height and width to wrapped geometry calculations

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    /test/jalview/gui/SeqPanelTest.java
JAL-2422 remove temporary patch (requires ChimeraX Daily or 1.2 build)

JAL-3251 On linux set (sun.awt.X11.XToolkit.)awtAppClassName to set the grouped application name in the taskbar

JAL-3521 Changed wording of INSTALLATION in source tarball build_properties

JAL-3521 Adding a build_properties into sourceDist tarball, with INSTALLATION=SourceDist git-commit...

JAL-2422 updated unit test for ChimeraX command change

JAL-2422 a fix and a fudge for two failing ChimeraX commands

Merge branch 'task/JAL-3796_notarization_no_uninstaller' into develop

Merge branch 'task/JAL-3805_Remove_Uninstall_Old_Jalview_application_for_develop_branch' into task/JAL-3796_notarization_no_uninstaller

Merge branch 'develop' into task/JAL-3796_notarization_no_uninstaller

Merge branch 'develop' into task/JAL-3796_notarization

JAL-3521 Updating file opening marker to %u

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    /utils/debian/mime_types_for_debian.pl
JAL-3521 Debian mime-type and desktop helper files, and script to create them

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    /utils/debian/debian/jalview-file.png
    • binary
    /utils/debian/debian/jalview-icon.png
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    /utils/debian/debian/jalview-mailcap
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    /utils/debian/debian/jalview-mime.xml
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    /utils/debian/debian/jalview.desktop
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    /utils/debian/file_associations_template-mailcap.txt
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    /utils/debian/file_associations_template-shared-mime-info.xml
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    /utils/debian/mime_types_for_debian.pl
JAL-3805 Smaller DMG Finder windows for all DS_Store files in utils/channels/... . Removed no longer used DS_Store files from utils/install4j.

    • binary
    /utils/install4j/DS_Store-NON-RELEASE
    • binary
    /utils/install4j/DS_Store-TEST-RELEASE
JAL-3805 New DS_Store for smaller DMG Finder window

JAL-3805 Remove Uninstall Old Jalview.app in Release_2_11_1_Branch