Clone Tools
  • last updated a few seconds ago
Constraints: committers
Constraints: files
Constraints: dates
JAL-3779 apply properties to all groups with given name, not just first

    • -105
    • +114
    • -5
    • +51
JAL-3766 what’s new and release notes for

JAL-3759 fix compilation error for test

    • -1
    • +1
JAL-3766 release notes for JAL-3759

JAL-3759 exclude hidden columns when processing column selection

    • -3
    • +18
Merge branch 'documentation/JAL-3766_relnotes' into releases/Release_2_11_1_Branch

Merge branch 'patch/JAL-3700_JAL-3748_JAL-3763_for_2_11_1_3' into releases/Release_2_11_1_Branch

JAL-3248 Fixed path typos in building.md/html and corrected shadow jar filename

JAL-3700 mapped sequence group includes short (or all gapped) sequences

    • -13
    • +17
    • -25
    • +24
JAL-3725 fix tests for EMBLFlatFile parser when mapping doesn’t include stop codon

    • -7
    • +8
JAL-3725 patch EMBL flat file to exclude stop codon from the mapping (for - needs cherry-pick to 2.11.2)

Merge branch 'bug/JAL-3760_protsTreatedAsNucleotides' into releases/Release_2_11_1_Branch

JAL-3248 Added step to create the eclipse files before project import. Noted non-fatal NPEs during build with gradle 6.6+

update test for JAL-3763 redact shared DS sequences for contiguous CDS

JAL-3768 noticed failure of test when run as part of suite via gradle - whilst patching JAL-3700 JAL-3748 JAL-3763 for

JAL-3700 JAL-3748 JAL-3763 don’t add stop codon via alignAs if guide peptide doesn’t include C terminus.

    • -2
    • +2
JAL-3763 Javadoc, check for null, additional tests

JAL-3763 test coverage for AlignedCodonFrame.markMappedRegion

    • -2
    • +4
    • -26
    • +129
JAL-3766 release notes for JAL-3611 JAL-3765

Merge branch 'releases/Release_2_11_1_Branch' of http://source.jalview.org/git/jalview into releases/Release_2_11_1_Branch

Merge branch 'bug/JAL-3765_Find_bugs_in_21112' into releases/Release_2_11_1_Branch

JAL-3766 cut new patch release

JAL-3765 fix test

    • -10
    • +13
fix for JAL-3765

JAL-3765 simple test that findAll finds all matches for a pattern when it is present multiple times in a sequence

    • -0
    • +10
JAL-3700 JAL-3763 create datasets for test sequences

    • -4
    • +8
JAL-3763 failsafe check for null

JAL-3763 refactored getCoveringMapping for virtual feature discovery

JAL-3763 always make a new dataset sequence for CDS sequence

    • -55
    • +41