jalview

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Commits this week: 2
Total Committers: 73
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Commits this week: 2

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Wednesday 11 May
3:50 pm

Jim Procter <j.procter@dundee.ac.uk>

Merge branch 'patch/JAL-4008_jabaws_2_2_1_patch' into doc/release_2_11_2_3

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1:44 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-4012 JAL-4008 release notes for Jalview 2.11.2.3

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    /RELEASE
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    /help/help/html/releases.html
Tuesday 10 May
5:56 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-4008 update jabaws client to 2.2.1 - definitely no log4j references !

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    /THIRDPARTYLIBS
    • binary
    /j11lib/jabaws-min-client-NO_LOG4J-2.2.0.jar
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    /j11lib/jabaws-min-client-NO_LOG4J-2.2.1.jar
    • binary
    /j8lib/jabaws-min-client-NO_LOG4J-2.2.0.jar
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    /j8lib/jabaws-min-client-NO_LOG4J-2.2.1.jar
Tuesday 19 Apr
3:04 pm

Jim Procter <j.procter@dundee.ac.uk>

Merge branch 'develop' into releases/Release_2_11_2_Branch

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3:03 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3992 bump version and report updates in 2.11.2.2 release notes

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    /help/help/html/releases.html
3:02 pm

Jim Procter <j.procter@dundee.ac.uk>

Merge branch 'bug/JAL-3997_NPE_in_wrapped_mode' into develop

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2:57 pm

Jim Procter <j.procter@dundee.ac.uk>

Merge branch 'bug/JAL-3365_extendedDSSP_via_stockholm' into develop

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Monday 18 Apr
2:49 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3997 check for tooltip being null before checking equivalence to last tooltip string

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    /src/jalview/gui/SeqPanel.java
1:27 pm

Jim Procter <j.procter@dundee.ac.uk>

Merge branch 'task/JAL-3992_update_docs' into bug/JAL-3365_extendedDSSP_via_stockholm

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12:51 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3992 fix path

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    /help/help/html/features/cursorMode.html
Saturday 16 Apr
1:36 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3365 expand range of allowed DSSP secondary structure symbols in Stockholm files

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    /src/jalview/datamodel/AlignmentAnnotation.java
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    /src/jalview/io/StockholmFile.java
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    /test/jalview/io/StockholmFileTest.java
Wednesday 13 Apr
4:13 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3992 shift+arrow to jump to next gap/residue in cursor/keyboard editing mode

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    /help/help/html/features/cursorMode.html
Tuesday 05 Apr
8:48 pm

Jim Procter <j.procter@dundee.ac.uk>

Merge branch 'develop' into releases/Release_2_11_2_Branch

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8:44 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3990 release notes and what’s new

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    /help/help/html/releases.html
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    /help/help/html/whatsNew.html
6:50 pm

Jim Procter <j.procter@dundee.ac.uk>

Merge branch 'develop' into releases/Release_2_11_2_Branch

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6:37 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3981 patch tests and remove errant imports

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    /src/jalview/io/SequenceAnnotationReport.java
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    /test/jalview/io/SequenceAnnotationReportTest.java
6:15 pm

Jim Procter <j.procter@dundee.ac.uk>

Merge branch 'develop' into releases/Release_2_11_2_Branch

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6:14 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3990 gradle spotlessApply

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    /src/jalview/gui/structurechooser/TDBResultAnalyser.java
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    /src/jalview/io/SequenceAnnotationReport.java
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    /test/jalview/fts/service/pdb/PDBFTSRestClientTest.java
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    /test/jalview/gui/structurechooser/StructureChooserQuerySourceTest.java
6:12 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3990 release notes for 2.11.2.1 patch release

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    /help/help/html/releases.html
5:57 pm

Jim Procter <j.procter@dundee.ac.uk>

Merge branch 'bug/JAL-3980_JAL-3981_tooltips_sequence_details' into develop

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Thursday 31 Mar
11:11 pm

Jim Procter <j.procter@dundee.ac.uk>

Merge branch 'develop' into releases/Release_2_11_2_Branch

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8:44 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3983 release note for JAL-3985

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    /help/help/html/releases.html
8:42 pm

Jim Procter <j.procter@dundee.ac.uk>

Merge branch 'bug/JAL-3085_avoid_414_error_for_PDBFTS' into develop

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3:17 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3085 update tests and mock responses, new P0dtd1 testcase

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    /test/jalview/fts/service/pdb/PDBFTSRestClientTest.java
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    /test/jalview/fts/threedbeacons/TDBeaconsFTSRestClientTest.java
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    /test/jalview/fts/threedbeacons/p01308_pdbfts_query.txt
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    /test/jalview/fts/threedbeacons/p01308_tdb_fts_query_resp.txt
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    /test/jalview/fts/threedbeacons/p01308_tdb_resp.txt
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    /test/jalview/fts/threedbeacons/p0dtd1_pdbfts_fts_query_pt1.txt
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    /test/jalview/fts/threedbeacons/p0dtd1_pdbfts_fts_query_pt1_resp.txt
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    /test/jalview/fts/threedbeacons/p0dtd1_pdbfts_fts_query_pt2.txt
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    /test/jalview/fts/threedbeacons/p0dtd1_pdbfts_fts_query_pt2_resp.txt
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    /test/jalview/fts/threedbeacons/p0dtd1_pdbfts_fts_query_pt3.txt
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    /test/jalview/fts/threedbeacons/p0dtd1_pdbfts_fts_query_pt4.txt
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    /test/jalview/fts/threedbeacons/p0dtd1_pdbfts_fts_query_pt4_resp.txt
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    /test/jalview/fts/threedbeacons/p0dtd1_tdb_fts_query_resp.txt
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    /test/jalview/fts/threedbeacons/p38398_tdb_fts_query_resp.txt
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    /test/jalview/gui/structurechooser/StructureChooserQuerySourceTest.java
2:06 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3985 formatting

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    /src/jalview/gui/structurechooser/ThreeDBStructureChooserQuerySource.java
2:06 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3985 split PDB id queries into multiple queries so server doesn’t 414

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    /src/jalview/gui/structurechooser/ThreeDBStructureChooserQuerySource.java
Wednesday 30 Mar
6:35 pm

Jim Procter <j.procter@dundee.ac.uk>

Merge branch 'patch/JAL-3976_3dbeaconsnull' into develop

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5:32 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3976 fix mock PDBFTS query & responses

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    /test/jalview/fts/threedbeacons/p01308_pdbfts_query.txt
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    /test/jalview/fts/threedbeacons/p01308_pdbfts_resp.txt
4:56 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3983 known issue note for JAL-3984

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    /help/help/html/releases.html
4:54 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3983 release notes for JAL-3975 and known issue note for JAL-3984

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    /help/help/html/releases.html