jalview

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JAL-2588 don’t test char==gap until we know the shader won’t colour gaps itself

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    /.ant-targets-build.xml
JAL-2588 field on overview colour finder for default gap colour

JAL-2588 JAL-2603 JAL-2610 release notes and docs

Merge branch 'feature/2588' into merge/develop_feature/2588_JAL-2588

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    /src/jalview/gui/SequenceRenderer.java
JAL-2675 bump version for branch to 2.10.2b1

JAL-1551 formatting

JAL-2675 release notes entry for 2.10.2b1, updated what’s new and link to latest notes in help.

JAL-2418 ahem - correct year for what's new

JAL-2418 JAL-2116 use single j2se 7+ argumant with java 9 add-modules - seems to work on java 8 (windows, osx, linux) without 'use latest version' popup and also on java 9

JAL-2418 JAL-2116 make sure java 8,7 vm args are also listed

Merge branch 'develop' into releases/Release_2_10_2_Branch

Merge branch 'documentation/JAL-2418_release2102' into develop

JAL-2418 formatting

JAL-2418 occupancy row in What’s New

Merge branch 'develop' into releases/Release_2_10_2_Branch

JAL-2418 add GPL to main sources

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    /src/jalview/analysis/TreeBuilder.java
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    /src/jalview/analysis/scoremodels/ScoreModels.java
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    /src/jalview/api/analysis/ScoreModelI.java
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    /src/jalview/gui/ColourMenuHelper.java
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    /src/jalview/gui/ComboBoxTooltipRenderer.java
  1. … 23 more files in changeset.
JAL-2418 source formatting

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    /src/MCview/AppletPDBCanvas.java
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    /src/MCview/AppletPDBViewer.java
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    /src/jalview/analysis/AAFrequency.java
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    /src/jalview/analysis/AlignSeq.java
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    /src/jalview/analysis/AlignmentUtils.java
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    /src/jalview/analysis/Conservation.java
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    /src/jalview/analysis/CrossRef.java
  1. … 450 more files in changeset.
Merge branch 'develop' into releases/Release_2_10_2_Branch

Merge branch 'documentation/JAL-2418_release2102' into develop

JAL-2418 mirror fonts option doc tweak

Merge branch 'documentation/JAL-2418_release2102' into develop

JAL-2418 whats new for 2.10.2

JAL-2418 reclassify some issues to features/bugs resolved

JAL-2418 typos in release notes

JAL-2418 check groovy script one-liners for restoring legacy score model behaviour

Merge branch 'develop' into releases/Release_2_10_2_Branch

JAL-2116 fix typo in build.xml for j2se element

Merge branch 'develop' into releases/Release_2_10_2_Branch

Merge branch 'documentation/JAL-2418_release2102' into develop

JAL-2418 bump release to Thursday