jalview

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Merge branch 'documentation/JAL-2675_release2102b1' into feature/JAL-2611

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    /src/jalview/appletgui/OverviewPanel.java
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    /src/jalview/gui/OverviewPanel.java
JAL-2681 release notes

Merge branch 'features/JAL-2681_duplicatecrossrefs' into documentation/JAL-2675_release2102b1

JAL-2435 last lost commit e926a5d redone

JAL-1551 formatting

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    /src/jalview/ws/dbsources/EmblXmlSource.java
JAL-2681 cross-ref selection for targeted debugging

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    /test/jalview/io/CrossRef2xmlTests.java
JAL-2681 source formatting

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    /test/jalview/io/CrossRef2xmlTests.java
JAL-2681 canonicalise DB source before fetching to avoid fetching the same ref !

JAL-2681 formatting

Merge branch 'documentation/JAL-2675_release2102b1' into releases/Release_2_10_2_Branch

JAL-2675 typo in what's new href

Merge branch 'develop' into releases/Release_2_10_2_Branch

JAL-2675 bump version for branch to 2.10.2b1

Merge branch 'develop' into releases/Release_2_10_2_Branch

JAL-1551 formatting

JAL-2675 release notes entry for 2.10.2b1, updated what’s new and link to latest notes in help.

JAL-2418 ahem - correct year for what's new

JAL-2418 JAL-2116 use single j2se 7+ argumant with java 9 add-modules - seems to work on java 8 (windows, osx, linux) without 'use latest version' popup and also on java 9

JAL-2418 JAL-2116 make sure java 8,7 vm args are also listed

Merge branch 'develop' into releases/Release_2_10_2_Branch

Merge branch 'documentation/JAL-2418_release2102' into develop

JAL-2418 formatting

JAL-2418 occupancy row in What’s New

Merge branch 'develop' into releases/Release_2_10_2_Branch

JAL-2418 add GPL to main sources

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    /src/jalview/analysis/TreeBuilder.java
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    /src/jalview/analysis/scoremodels/ScoreModels.java
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    /src/jalview/api/analysis/ScoreModelI.java
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    /src/jalview/gui/ColourMenuHelper.java
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    /src/jalview/gui/ComboBoxTooltipRenderer.java
  1. … 23 more files in changeset.
JAL-2418 source formatting

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    /src/MCview/AppletPDBCanvas.java
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    /src/MCview/AppletPDBViewer.java
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    /src/jalview/analysis/AAFrequency.java
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    /src/jalview/analysis/AlignSeq.java
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    /src/jalview/analysis/AlignmentUtils.java
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    /src/jalview/analysis/Conservation.java
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    /src/jalview/analysis/CrossRef.java
  1. … 450 more files in changeset.
Merge branch 'develop' into releases/Release_2_10_2_Branch

Merge branch 'documentation/JAL-2418_release2102' into develop

JAL-2418 mirror fonts option doc tweak

Merge branch 'documentation/JAL-2418_release2102' into develop