jalview

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JAL-3093 unit test adapts to actual number of annotation rows

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    /test/jalview/gui/SeqPanelTest.java
JAL-3132 status message for sequence and/or graph group annotation

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    /src/jalview/gui/AnnotationLabels.java
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    /test/jalview/gui/AnnotationLabelsTest.java
JAL-3132 set status message when over sequence id or annotation label

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    /src/jalview/gui/AnnotationLabels.java
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    /src/jalview/gui/CutAndPasteTransfer.java
JAL-3093 unit tests, no mouse action over left/right wrapped scale

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    /test/jalview/gui/SeqPanelTest.java
JAL-3093 tweaks to code and test for 3px gap above annotations in wrapped mode

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    /test/jalview/gui/SeqCanvasTest.java
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    /test/jalview/gui/SeqPanelTest.java
JAL-3093 unit tests for SeqPanel.findMousePosition

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    /test/jalview/gui/SeqPanelTest.java
JAL-3093 limited Consensus popup menu when in wrapped mode

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    /src/jalview/gui/AnnotationLabels.java
JAL-3093 added MousePos.isOverAnnotation() for extra clarity of intention

JAL-3093 'read-only' annotations when in wrapped mode

JAL-3093 refactor (+test) Annotation Labels tooltip ready for reuse

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    /src/jalview/gui/AnnotationLabels.java
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    /test/jalview/gui/AnnotationLabelsTest.java
JAL-3093 unit tests for finding annotation row index for mouse pos

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    /test/jalview/gui/AnnotationPanelTest.java
JAL-3093 show annotation tooltips and status message in wrapped mode

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    /src/jalview/gui/AnnotationPanel.java
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    /src/jalview/gui/SeqPanel.java
JAL-2843 tweaks to help text for filters

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    /help/html/features/featuresFormat.html
JAL-2843 help text for colour by attribute, feature filters

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    /help/html/features/featuresFormat.html
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    /src/jalview/schemes/FeatureColour.java
Merge branch 'bug/JAL-3120restoreFeatureColour' into develop

JAL-3120 preserve plain colour value when changing to Colour by Label

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    /src/jalview/gui/FeatureTypeSettings.java
Merge branch 'develop' of https://source.jalview.org/git/jalview.git into develop

Merge branch 'cherrypick/JAL-2808_notabs' into develop

JAL-2865 release notes

Merge branch 'develop' of https://source.jalview.org/git/jalview.git into develop

Merge branch 'merge/JAL-3091_JAL-3111_develop_211' into develop

Merge branch 'develop' of https://source.jalview.org/git/jalview.git into develop

JAL-1551 reinstated Save actions

JAL-3112 increased TEST_TIMEOUT to 9000ms - needed after inclusion discovered class path entries

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    /test/jalview/bin/CommandLineOperations.java
JAL-3112 Use classgraph to reconstruct the classpath for launching Jalview

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    /test/jalview/bin/CommandLineOperations.java
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    /utils/classgraph-4.1.6.jar
Merge branch 'merge/JAL-3091_JAL-3111_develop_211' into develop

JAL-3111 drop hts-1.33 as a dependency (in favour of htsjdk-2.12)

Merge branch 'merge/JAL-3091_JAL-3111_develop_211' into develop

Merge branch 'releases/Release_2_11_Branch' into merge/JAL-3091_develop_211

Merge branch 'develop' into releases/Release_2_11_Branch JAL-3091 bring 2.11 onto release 2.10.5 to simplify merge