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Merge branch 'develop' into features/JAL-3895_alphafoldcolours

JAL-4065 final fix for 2.11.2.5 - 5pm BST release

JAL-4065 revised to avoid a visit from the apostrophe police

JAL-4073 update tests

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    /test/jalview/ws/dbsources/PfamFullTest.java
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    /test/jalview/ws/dbsources/PfamSeedTest.java
Merge branch 'develop' of https://source.jalview.org/git/jalview into develop

JAL-4073 fix PEBCAK failure

JAL-4014 Changed gecos display names to match labels in help

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    /help/help/html/colourSchemes/index.html
JAL-4065 revised whatsNew to make sense !

JAL-4065 release 2.11.2.5 date is 11th Oct

Fix for JAL-4075 - don’t write a label in secondary structure annotation element

JAL-4065 update citations for Pfam and Rfam and added the Interpro citation

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    /help/help/html/features/seqfetch.html
JAL-4065 2.11.2.5 release version bump

JAL-4065 release notes and updated release date for 2.11.2.5

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    /help/markdown/whatsnew/whatsnew-2_11_2_5.md
stable url for PFAM retrieval via interpro api :) JAL-4073

JAL-1551 formatting

JAL-3895 alphafold colours via pluggable annotation row builder. Also ensures min/max set correctly

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    /src/jalview/ext/jmol/JmolParser.java
JAL-1551 formatting

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    /src/jalview/ws/dbsources/Pfam.java
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    /src/jalview/ws/dbsources/PfamFull.java
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    /src/jalview/ws/dbsources/PfamSeed.java
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    /test/jalview/ws/dbsources/PfamFullTest.java
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    /test/jalview/ws/dbsources/PfamSeedTest.java
JAL-4065 release notes for JAL-4073 JAL-4074

JAL-4073 Pfam retrieval now works via a template including $PFAMID$ and $ALTYPE$ (full, seed, etc). Also changed name of PFAM_BASEURL_KEY to PFAM_INTERPRO_URL_TEMPLATE to avoid misconfiguration

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    /src/jalview/ws/dbsources/Pfam.java
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    /src/jalview/ws/dbsources/PfamFull.java
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    /src/jalview/ws/dbsources/PfamSeed.java
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    /test/jalview/ws/dbsources/PfamFullTest.java
Patch for JAL-4074 - any content ending in ‘gzip’ recognised as a gzipped stream to decompress

JAL-4065 release notes for JAL-4014 and JAL-4063 in 2.11.2.5

JAL-4065 - new release notes featuring JAL-3612 fix

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    /help/markdown/releases/release-2_11_2_5.md
Merge branch 'bug/JAL-3612_overviewFeatureOrdering' into develop

JAL-4014 JAL-4063 Added gecos colourScheme names (INFO message) and fixed Clustal colourScheme name

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    /resources/lang/Messages_es.properties
JAL-4046 release on 9th August 2022

JAL-4046 JAL-3993 imports reformatting

JAL-4046 JAL-3993 patch for 2.11.2.4 release

JAL-4046 release notes for JAL-3991

Merge branch 'task/JAL-3991_check_actual_JAVA_VERSION_against_build_properties_in_application_startup' into develop

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    /resources/lang/Messages_es.properties