jalview

build.gradle

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Last Commit: 10 May
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Wednesday 30 Mar
4:12 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3973 exclude the original RELEASE file so gradle doesn't complain of duplicate entries in the tarball

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    /build.gradle
Sunday 13 Mar
9:00 pm

Ben Soares

Append git.hash and git.branch to RELEASE file stored in tarball. When compiling, if not in git repo use git.branch and git.hash from RELEASE file.

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    • -4
    • +29
    /build.gradle
Friday 11 Mar
9:31 am

Ben Soares

JAL-3973 This fixes the gradle build when not in a git repo. (Part 1 of the issue)

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    /build.gradle
Tuesday 08 Mar
12:34 am

Ben Soares

JAL-3103 Put jalview.jar first in getdown for .properties files. Remove now-not-needed exception handling from jalview code for openURL. Change Default browser input to JComboBox populated by BrowserLauncher2

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    • +3
    /build.gradle
  2. … 11 more files in changeset.
Thursday 03 Mar
3:38 pm

Ben Soares

JAL-3830 fix broken/buggy install4j9 setting of executeSetupApp=false still running setupApp

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    /build.gradle
Wednesday 23 Feb
6:54 pm

Jalview Development Admin <jalview-dev-owner@jalview.org>

JAL-3830 temporarily disable the setup screen for OSX dmgs until we can properly document its use

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    • +5
    /build.gradle
Thursday 17 Feb
5:10 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3823 JAL-3830 update gradle plugin for install4j to 9.0.6

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    /build.gradle
Thursday 10 Feb
3:08 pm

Jim Procter

3:07 pm

Jim Procter

JAL-3553: Create working getdown appbase and jvl file(s) for each old version of Jalview
JAL-3553: Create working getdown appbase and jvl file(s) for each old version of Jalview
12:12 pm

Jim Procter

Saturday 29 Jan
12:57 am

Ben Soares

Merge branch 'develop' into improvement/JAL-3830_install4j9_macos_setup_application

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    • +8
    /build.gradle
  2. … 1 more file in changeset.
Thursday 27 Jan
2:21 pm

Jim Procter <j.procter@dundee.ac.uk>

Merge branch 'bug/JAL-3633_read_proxy_settings_from_jalview_properties_in_getdown' into develop

Conflicts:

src/jalview/bin/MemorySetting.java

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    /build.gradle
  2. … 8 more files in changeset.
Wednesday 27 Oct 2021
8:24 pm

Ben Soares

JAL-3830 install4j9 tries to parse and can't cope with the hyphens and filename format of the jre-VERSION-OS-ARCH.tar.gz JRE tar files, so using underscores in symbolic links

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    /build.gradle
  2. … 2 more files in changeset.
Tuesday 26 Oct 2021
6:06 pm

Ben Soares

JAL-3907 adjusted download_jdks.sh and download_jres.sh scripts to use adoptium and added Java 17 download. Added JAVA_VERSION=17 as a gradle build property option.

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    /build.gradle
  2. … 2 more files in changeset.
Friday 17 Sep 2021
4:38 pm

Jim Procter <j.procter@dundee.ac.uk>

JAL-3874 - replace Jmol with custom build of 14.31.53 from Jmol-SwingJS GitHub repo

Options
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    • +11
    /build.gradle
  2. … 5 more files in changeset.
Wednesday 15 Sep 2021
7:52 am

Jim Procter

Wednesday 21 Jul 2021
12:50 pm

Ben Soares

JAL-3850 fixed full class name

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    /build.gradle
12:32 pm

Ben Soares

JAL-3850 using reflection for SimpleHttpFileServerFactory

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    • +7
    /build.gradle
Tuesday 08 Jun 2021
5:11 pm

Ben Soares

Merge branch 'develop' into improvement/JAL-3830_macOS_bundle_wrapper

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    /build.gradle
Monday 26 Apr 2021
5:56 pm

Ben Soares

JAL-3743 Fixed NullPointerExceptions happening with linkCheck task when gradle >= 6.6

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    /build.gradle
5:56 pm

Ben Soares

JAL-3743 JAL-3745 Fixed NullPointerExceptions happening with linkCheck and jalviewjsTranspile tasks when gradle >= 6.6

Options
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    • +4
    /build.gradle
Wednesday 31 Mar 2021
11:16 pm

Ben Soares

JAL-3830 BAT file wrapper around powershell, so jalview works in command prompt. Added install4j option for installer to add Jalview's bin dir to Path in Windows. Added install4j option to create symlink to bash script to user's local bin (first of ~/bin, ~/.local/bin, ~/local/bin, ~/opt/bin that exists. First two of these usually automatically in PATH).

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    /build.gradle
  2. … 3 more files in changeset.
Thursday 25 Mar 2021
2:11 am

Ben Soares

JAL-3633 getdown reads jalview_properties for proxy settings

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    /build.gradle
  2. … 2 more files in changeset.
Wednesday 24 Mar 2021
1:49 am

Ben Soares

JAL-3830 Moved wrappers to bin/jalview.* and make a symlink bin/jalview. Install4j script now jalviewg

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    /build.gradle
  2. … 6 more files in changeset.
Friday 19 Mar 2021
10:53 pm

Ben Soares

JAL-3503 Added a Startup tab in Preferences, with gui for JVMMEMMAX and JVMMEMPC settings. Allowed jalview.bin.Launcher and getdown to read/use these memory settings at launch. Added channel.props to getdown appdir, used to determing correct .jalview_properties file. Refactored MemorySetting a bit, with more helper methods for the Preferences tab.

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    • +7
    /build.gradle
  2. … 20 more files in changeset.
Wednesday 17 Mar 2021
9:06 pm

Ben Soares

JAL-3830 Now using a single universal bash script (jalviewc) for bash in linux, macos, cygwin and WSL. It keeps things together.

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    /build.gradle
  2. … 5 more files in changeset.
12:30 am

Ben Soares

JAL-3830 add the windows bash script to getdown files and install4j installers

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    /build.gradle
  2. … 2 more files in changeset.
Friday 12 Mar 2021
6:26 pm

Ben Soares

JAL-3830 improved bash scripts. Added powershell script. Needs testing

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    /build.gradle
  2. … 4 more files in changeset.
1:09 am

Ben Soares

JAL-3830 unix and macos wrappers. Symbolic link to jalviewc-macos in Contents/MacOS/jalviewc.

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    /build.gradle
  2. … 5 more files in changeset.
Wednesday 10 Mar 2021
7:58 pm

Ben Soares

JAL-3830 install4j adds script to Jalview.app/Contents/MacOS/jalview but we need install4j9 to make it executable

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    /build.gradle
  2. … 2 more files in changeset.