building.html

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JAL-3816 bump version number and cut release notes

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JAL-3248 Added mention of version 'TEST' in shadow jar filename in building.md/html since develop branch currently uses this by default.

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JAL-3248 Fixed path typos in building.md/html and corrected shadow jar filename

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JAL-3248 Fixed path typos in building.md/html and corrected shadow jar filename

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JAL-3248 Added step to create the eclipse files before project import. Noted non-fatal NPEs during build with gradle 6.6+

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JAL-3248 Added step to create the eclipse files before project import. Noted non-fatal NPEs during build with gradle 6.6+

Cherry pick from release, generated new building.html as it's a different process. Also added in a "**/*.md" into build.gradle (wasn't finding anything with "*.md")

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JAL-3225 Minor change to building.md for flexmark, and html output files from the process, handy to have in repo for developers

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JAL-3248 Added instructions for downloading and configuring as gradle project in Eclipse only, i.e. no command line tools needed

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JAL-3248 building.html now generated by pandoc 'brew install pandoc'

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JAL-3248 added conversion of building.md to building.html to gradle task. Will happen before making jar if pandoc available

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JAL-3248 Building from source documentation in markdown and converted to HTML

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JAL-3248 Building from source documentation in markdown and converted to HTML

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JAL-3248 some progress on prerequesite installation instructions

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Added a unixInstaller and unixArchive media-type to the install4j template. unixArchive is now specified in the gradle.properties (unixInstaller can be added).

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Merge branch 'task/JAL-3225_Integration_Gradle_building_into_Eclipse' into bug/JAL-3224_getdown_changed_to_unpack_tgz_resources

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JAL-2089 patch broken merge to master for Release 2.10.0b1

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JAL-2089 Merge branch releases/Release_2_10_Branch to master

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JAL-2089 update developer doc

JAL-1400 JAL-2089 allow configurable signature algorithms JAL-1400 JAL-2089 update developer docs for webstart testing

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JAL-1925 update source version in license

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JAL-1894 update year/version in copyright

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JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensing glob

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JAL-1683 replace year/version strings with tokens in source

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JAL-1620 version bump and release notes

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JAL-1517 update copyright to version 2.8.2

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JAL-1503 update version in GPL header

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JAL-1432 updated copyright notices

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Jalview 2.8 Source Header

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update build notes

update author list in license for (JAL-826)

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