jalview/schemas

vamsas.xsd

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Last Commit: 30 Aug 21
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Monday 30 Aug 2021
11:14 am

Jim Procter <j.procter@dundee.ac.uk>

JAL-3863 add canonical DBRefEntry flag to Jalview project

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    ./vamsas.xsd
  2. … 26 more files in changeset.
Friday 07 Jun 2019
2:03 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-3251 added optional attributes Sequence.biotype, Mapping.mappingType

Conflicts:

src/jalview/xml/binding/jalview/AlcodonFrame.java

src/jalview/xml/binding/jalview/Annotation.java

src/jalview/xml/binding/jalview/AnnotationColourScheme.java

src/jalview/xml/binding/jalview/AnnotationElement.java

src/jalview/xml/binding/jalview/DoubleMatrix.java

src/jalview/xml/binding/jalview/DoubleVector.java

src/jalview/xml/binding/jalview/Feature.java

src/jalview/xml/binding/jalview/FeatureMatcher.java

src/jalview/xml/binding/jalview/FeatureMatcherSet.java

src/jalview/xml/binding/jalview/FilterBy.java

src/jalview/xml/binding/jalview/JalviewModel.java

src/jalview/xml/binding/jalview/JalviewUserColours.java

src/jalview/xml/binding/jalview/MapListType.java

src/jalview/xml/binding/jalview/Mapping.java

src/jalview/xml/binding/jalview/NoValueColour.java

src/jalview/xml/binding/jalview/ObjectFactory.java

src/jalview/xml/binding/jalview/PcaDataType.java

src/jalview/xml/binding/jalview/Pdbentry.java

src/jalview/xml/binding/jalview/Sequence.java

src/jalview/xml/binding/jalview/SequenceSet.java

src/jalview/xml/binding/jalview/SequenceType.java

src/jalview/xml/binding/jalview/ThresholdType.java

src/jalview/xml/binding/jalview/VAMSAS.java

src/jalview/xml/binding/jalview/WebServiceParameterSet.java

src/jalview/xml/binding/jalview/package-info.java

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    ./vamsas.xsd
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Wednesday 06 Feb 2019
3:27 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-2738 use GeneLocus extends DBRefEntry to hold chromosomal mappings

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    ./vamsas.xsd
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Thursday 06 Dec 2018
4:29 pm

Ben Soares

JAL-3130 incorporating feature/JAL-3063jaxbNoCastor and new script utils/jdeps_jlink_all.sh which works out module dependencies (not as straightforward as it should be) and makes a java 11 JRE

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    ./vamsas.xsd
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Friday 28 Sep 2018
12:28 pm

gmungoc <g.m.carstairs@dundee.ac.uk>

JAL-3063 comments re use of xjc to generate Java binding classes

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    ./vamsas.xsd
  2. … 2 more files in changeset.
Tuesday 25 Oct 2016
11:49 am

Jim Procter

JAL-2089 patch broken merge to master for Release 2.10.0b1

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    ./vamsas.xsd
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Friday 16 Oct 2015
7:51 am

Jim Procter

JAL-1925 update source version in license

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    ./vamsas.xsd
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Thursday 08 Oct 2015
12:21 pm

Jim Procter

JAL-1894 update year/version in copyright

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    ./vamsas.xsd
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Thursday 10 Sep 2015
11:25 am

Jim Procter

JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensing glob

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    ./vamsas.xsd
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Friday 06 Mar 2015
3:26 pm

Jim Procter <jprocter@dundee.ac.uk>

JAL-1683 replace year/version strings with tokens in source

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    ./vamsas.xsd
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Monday 15 Dec 2014
6:34 am

Jim Procter <jprocter@dundee.ac.uk>

JAL-1620 version bump and release notes

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    ./vamsas.xsd
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Monday 03 Nov 2014
10:09 am

Jim Procter <jprocter@dundee.ac.uk>

JAL-1578 JAL-674 store/restore alignment annotation properties in Jalview 2.8.2 project (allows the Annotated PDB file import/export to project/import test to pass)

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    ./vamsas.xsd
  2. … 6 more files in changeset.
Thursday 05 Jun 2014
7:59 pm

Jim Procter <jprocter@dundee.ac.uk>

JAL-1517 update copyright to version 2.8.2

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    ./vamsas.xsd
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Thursday 22 May 2014
3:06 pm

Jim Procter <jprocter@dundee.ac.uk>

JAL-1503 update version in GPL header

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    ./vamsas.xsd
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Wednesday 29 Jan 2014
3:56 pm

Jim Procter <jprocter@compbio.dundee.ac.uk>

JAL-1432 updated copyright notices

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    ./vamsas.xsd
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Thursday 04 Oct 2012
5:43 pm

jprocter <jprocter@compbio.dundee.ac.uk>

Jalview 2.8 Source Header

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    ./vamsas.xsd
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Wednesday 30 May 2012
7:26 pm

jprocter <jprocter@compbio.dundee.ac.uk>

updated schema to store and recover belowAlignment and calcId for JAL-1109 and JAL-1110

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    ./vamsas.xsd
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Monday 10 Oct 2011
11:51 am

jprocter <jprocter@compbio.dundee.ac.uk>

update author list in license for (JAL-826)

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    ./vamsas.xsd
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Tuesday 27 Sep 2011
9:15 am

jprocter <jprocter@compbio.dundee.ac.uk>

apply version 2.7 copyright

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    ./vamsas.xsd
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Thursday 21 Apr 2011
2:14 pm

jprocter <Jim Procter>

added graphHeight attribute to schema (JAL-784)

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Thursday 23 Sep 2010
8:11 am

jprocter <Jim Procter>

Jalview 2.6 source licence

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    ./vamsas.xsd
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Friday 30 Apr 2010
10:39 am

jprocter <Jim Procter>

jalview 2.5 release banner

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    ./vamsas.xsd
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Monday 05 Apr 2010
4:34 pm

jprocter <Jim Procter>

extend XML model for graduated feature colours, group associated manual/auto annotation, consensus profile/histograms, annotation label formatting, viewport highlight follow/select message receive settings

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    ./vamsas.xsd
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Monday 08 Jun 2009
11:58 am

jprocter <Jim Procter>

apply gpl development license

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    ./vamsas.xsd
  2. … 451 more files in changeset.
Wednesday 12 Nov 2008
11:18 am

jprocter <Jim Procter>

jalview XML schema update for 2.4.1 (or 2.5?) introducing IDs for views and treepanels and proper reconstruction of dataset/Alignment relationships

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    ./vamsas.xsd
  2. … 110 more files in changeset.
Thursday 30 Aug 2007
12:38 pm

jprocter <Jim Procter>

added aligned codon frames, and dataset reference ids for sequenceSet and sequences to project xml

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    ./vamsas.xsd
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Wednesday 16 May 2007
10:16 am

amwaterhouse <Andrew Waterhouse>

visible

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    ./vamsas.xsd
Tuesday 01 May 2007
11:03 am

amwaterhouse <Andrew Waterhouse>

Seqset properties saved

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    ./vamsas.xsd
Thursday 26 Apr 2007
6:10 pm

jprocter <Jim Procter>

total annotation score is a double for maximum precision.

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    ./vamsas.xsd
  2. … 4 more files in changeset.
Wednesday 25 Apr 2007
12:47 pm

jprocter <Jim Procter>

AlignmentAnnotation: added annotation score attribute and allowed for annotation[] array to be null

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    ./vamsas.xsd
  2. … 11 more files in changeset.