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JAL-3521 High quality file icons for jalview associated files, and associated mime-type icon references

  1. … 16 more files in changeset.
JAL-3521 Adjusted wrapper shell script and .desktop file to cater for opening a file with or without -open arg

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JAL-3521 Updating file opening marker to %u

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JAL-3521 Debian mime-type and desktop helper files, and script to create them

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  1. … 7 more files in changeset.