jalview

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JAL-3976 fix mock PDBFTS query & responses

make AlignFrame the parent of FeatureEditor dialog, and have parent Component request focus after...
make AlignFrame the parent of FeatureEditor dialog, and have parent Component request focus after...
JAL-3975 forced re-focus to alignframe after Create Sequence Feature dialog.
JAL-3975 forced re-focus to alignframe after Create Sequence Feature dialog.
JAL-3976 skip entries with null values when analyzing

JAL-3976 update tests

Merge branch 'master' into releases/Release_2_11_2_Branch

    • binary
    /j11digestonly/intervalstore-v1.0.jar
    • binary
    /j8digestonly/intervalstore-v1.0.jar
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    • +0
    /test/jalview/gui/SplitFrameTest.java
Merge branch 'develop' into releases/Release_2_11_2_Branch

JAL-3746 bump release date to 10th March - after UoD network maintenance

JAL-3796 include entitlements when codesigning for macOS - doesn't actually help :(

Merge branch 'develop' into releases/Release_2_11_2_Branch

JAL-3796 commit jni lib in Jmol library that is signed with Jalview's OSX cert

Merge branch 'develop' into releases/Release_2_11_2_Branch

JAL-3746 JAL-3841 fix README typo

Merge branch 'develop' into releases/Release_2_11_2_Branch

JAL-3746 more docs tweaking and release notes

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    • +1
    /help/help/html/features/preferences.html
Merge branch 'spike/try_spotless_JAL-3438' into develop

JAL-3746 apply copyright to tests

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    /test/jalview/bin/HiDPISettingTest1.java
  1. … 59 more files in changeset.
JAL-3746 apply copyright to source

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    /src/jalview/ext/pymol/PymolCommands.java
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    /src/jalview/ext/pymol/PymolManager.java
    • -0
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    /src/jalview/ext/rbvi/chimera/ChimeraXManager.java
    • -0
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    /src/jalview/fts/api/StructureFTSRestClientI.java
    • -0
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    /src/jalview/fts/service/threedbeacons/.gitignore
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    /src/jalview/gui/ChimeraXViewFrame.java
  1. … 31 more files in changeset.
JAL-3438 spotless for 2.11.2.0

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    /src/com/stevesoft/pat/ChangeRule.java
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    /src/com/stevesoft/pat/Ctrl.java
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    /src/com/stevesoft/pat/FastBracket.java
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    /src/com/stevesoft/pat/Regex.java
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    /src/com/stevesoft/pat/RegexWriter.java
  1. … 647 more files in changeset.
Merge branch 'develop' into releases/Release_2_11_2_Branch

JAL-3746 JAL-3841 new README and finalising 2.11.2.0 release notes

JAL-3108 updated Ensembl client and model species names

JAL-3746 new release date for 2.11.2

JAL-3746 JAL-3103 java.awt.Desktop.showURL method mechanism release notes

Merge branch 'bug/JAL-3103_browser_launcher_problems_macos_and_linux' into develop

JAL-3103 updated help doc to remove default browser choice

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    /help/help/html/features/preferences.html
JAL-3103 Removed code and unused widgets for defaultBrowser

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    /src/jalview/jbgui/GPreferences.java
JAL-3103 Remove BrowserLauncher2 and use Desktop.browse(url) with wrapper methods

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    /resources/lang/Messages_es.properties
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    /src/jalview/util/BrowserLauncher.java
JAL-3103 add BrowserLauncher2 LGPLv2.1 to THIRDPARTYLIBS