jalview

Clone Tools

Stats

Commits this week: 18
Total Committers: 72
Last Commit:
Commits this week: 18

Lines of code count not available

Commit Activity

Commits By Day In Week
52 week commits volume
Commits By Day In Week
Commits by day
Commits By Day In Week
Commits by hour
Commits By Hour In Day
Commit calendar
 

Most active committers (90 days)

loading
loading
  • last updated a few seconds ago
All Commits Reviews
Constraints
Constraints: committers
 
Constraints: files
Constraints: dates
Tuesday 13 Jul
11:45 am

Jim Procter <j.procter@dundee.ac.uk>

JAL-3842 fix automatic what's new link for custom version builds

Options
    • -1
    • +1
    /help/help/html/releases.html
Tuesday 06 Jul
5:42 pm

Jim Procter

5:42 pm

Jim Procter

WIP
WIP
Wednesday 30 Jun
11:31 am

Jim Procter <j.procter@dundee.ac.uk>

JAL-3842 JAL-3746 (need to cherry pick to develop) - automatically generate link to latest release notes in what's new

Options
    • -1
    • +1
    /help/help/html/whatsNew.html
Wednesday 09 Jun
6:06 pm

Jim Procter

JAL-3842 2.11.1.5 what’s new, release notes, and version bump

Options
    • -1
    • +1
    /RELEASE
    • -42
    • +70
    /help/help/html/releases.html
    • -0
    • +5
    /help/help/html/whatsNew.html
5:38 pm

Jim Procter

Merge branch 'patch/JAL-3840_2_11_1_4' into releases/Release_2_11_1_Branch

Options
4:53 pm

Jim Procter

JAL-3840 don’t update the modal residue count for gaps

Options
    • -1
    • +6
    /src/jalview/datamodel/ResidueCount.java
4:40 pm

Jim Procter

fixes JAL-3840

Options
    • -9
    • +1
    /src/jalview/datamodel/ResidueCount.java
4:35 pm

Jim Procter

JAL-3840 failing test - show that addGaps overflows

Options
    • -1
    • +1
    /src/jalview/datamodel/ResidueCount.java
    • -0
    • +12
    /test/jalview/datamodel/ResidueCountTest.java
Monday 26 Apr
6:27 pm

Ben Soares

JAL-3248 Archived old README. Added new README to point user to doc/building.md

Options
    • -45
    • +1
    /README
    • -0
    • +47
    /doc/old_ant_build_README
5:56 pm

Ben Soares

JAL-3743 Fixed NullPointerExceptions happening with linkCheck task when gradle >= 6.6

Options
    • -3
    • +2
    /build.gradle
Monday 19 Apr
4:37 pm

Ben Soares

JAL-3833 cap the scaling used by HiDPISetting for incorrect DPI values or incorrect height/width values

Options
    • -0
    • +10
    /src/jalview/bin/HiDPISetting.java
Tuesday 09 Mar
1:03 pm

Jim Procter

JAL-3816 release date updated to 9th March

Options
    • -1
    • +1
    /help/help/html/releases.html
Friday 05 Mar
6:19 pm

Jim Procter

JAL-3816 release date set for 8th March and updated what's new

Options
    • -1
    • +1
    /help/help/html/releases.html
    • -25
    • +12
    /help/help/html/whatsNew.html
5:44 pm

Jim Procter

JAL-3816 new known defects JAL-3705 and JAL-3806

Options
    • -1
    • +15
    /help/help/html/releases.html
Thursday 04 Mar
11:44 am

Jim Procter

Revert "Merge branch 'bug/JAL-3806_mappingCoversSequence' into releases/Release_2_11_1_Branch"

This reverts commit cb628aab46f9027e71b71203b322f96710e09990, reversing

changes made to a40669b2eeb34a6c760b63c172a31a194b456f24.

Options
    • -2
    • +2
    /src/jalview/datamodel/AlignedCodonFrame.java
    • -0
    • +1
    /src/jalview/util/MappingUtils.java
    • -111
    • +20
    /test/jalview/util/MappingUtilsTest.java
11:39 am

Jim Procter

Revert "JAL-3816 release notes for JAL-3806"

This reverts commit ead40d75a04715c80c61e34e277bb995cb2bef90.

Options
    • -1
    • +0
    /help/help/html/releases.html
Friday 26 Feb
3:02 pm

Jim Procter

JAL-3816 release notes for JAL-3806

Options
    • -0
    • +1
    /help/help/html/releases.html
2:02 pm

Jim Procter

Merge branch 'bug/JAL-3806_mappingCoversSequence' into releases/Release_2_11_1_Branch

Options
1:55 pm

Jim Procter

JAL-3816 JAL-3814 JAL-3813 JAL-3812 JAL-3811 JAL-3818 release notes and date for 2.11.1.4 release

Options
    • -3
    • +3
    /help/help/html/releases.html
Thursday 25 Feb
3:57 pm

Mungo Carstairs

3:56 pm

Mungo Carstairs

This is likely an improvement on the "roll your own" pattern of setting Runnable handlers for dialog responses as hacked together for JalviewJS (JAL-3048). If so, it would be preferable (but no sma...

This is likely an improvement on the "roll your own" pattern of setting Runnable handlers for dialog responses as hacked together for JalviewJS (JAL-3048). If so, it would be preferable (but no small job) to change all dialogs to this pattern.

There are still numerous dialogs that have not been changed to either pattern (so won't work in SwingJS): see comment at https://issues.jalview.org/browse/?focusedCommentId=20525&page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel#JAL-3048comment-20525.

2:21 pm

Mungo Carstairs

Class has some compiler warnings which could easily be resolved (typed Hashtable, unused import).

Class has some compiler warnings which could easily be resolved (typed Hashtable, unused import).

2:17 pm

Mungo Carstairs

It would be good to add Javadoc to this method

It would be good to add Javadoc to this method

2:14 pm

Mungo Carstairs

As an aside, I would suggest inlining (removing) the two overloaded constructors that call this one (to reduce code bloat).

As an aside, I would suggest inlining (removing) the two overloaded constructors that call this one (to reduce code bloat).

Wednesday 24 Feb
4:49 pm

Jim Procter

Merge branch 'bug/JAL-3818_jmolDeadlock' into releases/Release_2_11_1_Branch

Options
4:48 pm

Jim Procter

Merge branch 'releases/Release_2_11_1_4_debianpatches' into releases/Release_2_11_1_Branch

Options
4:45 pm

Jim Procter

4:43 pm

Jim Procter

JAL-3818 process Jmol callbacks in AWT thread
JAL-3818 process Jmol callbacks in AWT thread
Friday 12 Feb
6:24 pm

Ben Soares

JAL-3521 High quality file icons for jalview associated files, and associated mime-type icon references

Options
    • binary
    /utils/debian/debian/icons/128x128/apps/jalview-icon.png
    • binary
    /utils/debian/debian/icons/16x16/apps/jalview-icon.png
    • binary
    /utils/debian/debian/icons/16x16/mimetypes/x-jalview-file.png
    • binary
    /utils/debian/debian/icons/22x22/mimetypes/x-jalview-file.png
    • binary
    /utils/debian/debian/icons/24x24/mimetypes/x-jalview-file.png
    • binary
    /utils/debian/debian/icons/256x256/apps/jalview-icon.png
    • binary
    /utils/debian/debian/icons/32x32/apps/jalview-icon.png
    • binary
    /utils/debian/debian/icons/32x32/mimetypes/x-jalview-file.png
    • binary
    /utils/debian/debian/icons/48x48/apps/jalview-icon.png
    • binary
    /utils/debian/debian/icons/48x48/mimetypes/x-jalview-file.png
    • binary
    /utils/debian/debian/icons/512x512/apps/jalview-icon.png
    • binary
    /utils/debian/debian/icons/512x512/mimetypes/x-jalview-file.png
    • binary
    /utils/debian/debian/icons/64x64/apps/jalview-icon.png
    • binary
    /utils/debian/debian/jalview-file.png
    • -22
    • +22
    /utils/debian/debian/jalview-mime.xml
    • -1
    • +1
    /utils/debian/file_associations_template-shared-mime-info.xml
    • -1
    • +1
    /utils/debian/mime_types_for_debian.pl