jalview

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JAL-2826 added action performed for hiding collapsed sequences

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    /src/jalview/ext/archaeopteryx/AptxFrame.java
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    /src/jalview/ext/treeviewer/TreeFrameI.java
JAL-2826 added isCollapsed boolean to tree nodes

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    /src/jalview/ext/archaeopteryx/TreeNode.java
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    /src/jalview/ext/treeviewer/TreeNodeI.java
JAL-1953 added configuration font setters

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    /src/jalview/ext/archaeopteryx/AptxInit.java
JAL-1953 some more comments, moved JalviewBinding

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    /src/jalview/ext/archaeopteryx/AptxInit.java
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    /src/jalview/ext/treeviewer/JalviewBinding.java
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    /src/jalview/ext/treeviewer/TreePanelI.java
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    /src/jalview/ext/treeviewer/TreeParserI.java
JAL-1953 more javadoc comments

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    /src/jalview/ext/archaeopteryx/Tree.java
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    /src/jalview/ext/treeviewer/TreeFrameI.java
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    /src/jalview/ext/treeviewer/TreeI.java
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    /src/jalview/ext/treeviewer/TreeNodeI.java
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    /src/jalview/ext/treeviewer/TreePanelI.java
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    /src/jalview/ext/treeviewer/TreeParserI.java
JAL-1953 first pass of adding javadoc, some methods renamed

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    /src/jalview/ext/archaeopteryx/AptxFrame.java
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    /src/jalview/ext/archaeopteryx/AptxInit.java
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    /src/jalview/ext/archaeopteryx/Tree.java
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    /src/jalview/ext/treeviewer/TreeBuilderI.java
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    /src/jalview/ext/treeviewer/TreeFrameI.java
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    /src/jalview/ext/treeviewer/TreeI.java
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    /src/jalview/ext/treeviewer/TreeNodeI.java
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    /src/jalview/ext/treeviewer/TreePanelI.java
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    /src/jalview/ext/treeviewer/TreeParserI.java
JAL-2856 added refreshing of Aptx view when tree frame gets added

JAL-2798 label name changed

JAL-2844 allow clicks outside of the tree range again (clears selection)

JAL-2844 updated forester.jar for drawing partitioning line

Merge branch 'develop' of https://source.jalview.org/git/jalview.git into kjvdh/features/PhylogenyViewer

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    /resources/lang/Messages.properties
JAL-2844 branch colour setter improved

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    /src/jalview/ext/archaeopteryx/TreeNode.java
JAL-2866 remove forester's submodule folder

JAL-2866 remove forester from .gitmodules

JAL-2872 added setters for GUI sizes

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    /src/jalview/ext/archaeopteryx/AptxFrame.java
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    /src/jalview/ext/treeviewer/TreeFrameI.java
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    /src/jalview/ext/treeviewer/TreePanelI.java
JAL-2798 added != null check for Aptx trees

JAL-2858 update release date and rejig what's new message

JAL-2858 fix what's new

JAL-2858 update latest release notes link in TOC

JAL-2859 release notes

JAL-2858 update release notes

JAL-2858 release notes for 2.10.3b1 (including revision to EnsemblGenomes client as per JAL-2679)

JAL-2858 bump version number for 2.10.3b1

Revert "JAL-2890 added CIPRES client .jar"

This reverts commit 17fdf9ce81e035bfe43695f997bb9a83dce52815.

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    /lib/cipres_rest_client-jar-with-dependencies.jar
Revert "JAL-2890 proper .jar this time and copied cipres' example class"

This reverts commit b7dca7564f78d231297a4d8be3fbea90cd572a14.

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    /lib/cipres_rest_client-jar-with-dependencies.jar
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    /src/jalview/ext/cipres/CipresExample.java
Revert "JAL-2890 added CIPRES' javadoc .jar to Jalview lib"

This reverts commit a4824de7060a7429991c35c56252dab7be7d3cde.

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    /lib/cipres_rest_client-javadoc.jar
JAL-2805 small redundant method call fix

JAL-2890 added CIPRES' javadoc .jar to Jalview lib

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    /lib/cipres_rest_client-javadoc.jar
JAL-2890 proper .jar this time and copied cipres' example class

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    /lib/cipres_rest_client-jar-with-dependencies.jar
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    /src/jalview/ext/cipres/CipresExample.java
JAL-2890 added CIPRES client .jar

    • binary
    /lib/cipres_rest_client-jar-with-dependencies.jar