jalview

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JAL-3068 LineartOptions for EPS/HTML/SVG, new preferences, i18n

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    /resources/lang/Messages_es.properties
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    /src/jalview/gui/EPSOptions.java
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    /src/jalview/gui/HTMLOptions.java
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    /src/jalview/gui/LineartOptions.java
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    /src/jalview/gui/Preferences.java
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    /src/jalview/gui/SVGOptions.java
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    /src/jalview/jbgui/GPreferences.java
Revert "Revert "JAL-3032 net.sf.j2s.core_3.2.1 upgrade""

This reverts commit 75ce39c3308a69bafc2e7c5514e44de22dd3d6f0.

    • binary
    /swingjs/ver/net.sf.j2s.core.3.1.1.jar
    • binary
    /swingjs/ver/net.sf.j2s.core_3.2.1.jar
JAL-3060 tidy Cancel dialog action handler code

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    /src/jalview/gui/FeatureEditor.java
Revert "JAL-3032 net.sf.j2s.core_3.2.1 upgrade"

This reverts commit c9810b8cc443bd2ccd8c42b7318c68f6ae463f47.

    • binary
    /swingjs/ver/net.sf.j2s.core.3.1.1.jar
    • binary
    /swingjs/ver/net.sf.j2s.core_3.2.1.jar
JAL-3060 more extensive extract method refactoring of FeatureEditor

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    /src/jalview/gui/FeatureEditor.java
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    /src/jalview/gui/FeatureSettings.java
JAL-3032 net.sf.j2s.core_3.2.1 upgrade

- project build command back to org.eclipse.jdt.core.javabuilder

- uses JDT CompilationParticipant extension instead of a massive

specialized builder

- solves the Eclipse Photon (non)incremental build problem

- stamps transpiler version into trailer on each .js file

- best (but not critical) to use -clean option when starting Eclipse

after adding this new version of the transpiler.

    • binary
    /swingjs/ver/net.sf.j2s.core.3.1.1.jar
    • binary
    /swingjs/ver/net.sf.j2s.core_3.2.1.jar
JAL-3026 JLabel for SequenceFeature details in jalview-js

JAL-3026 JLabel for alignment properties in jalview-js

Merge branch 'Jalview-BH/JAL-3048_exportSettingsrefactor' into Jalview-BH/JAL-3026

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    /src/jalview/gui/AlignFrame.java
JAL-1551 formatting

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    /src/jalview/gui/AlignFrame.java
JAL-3048 refactored export settings to bean+dialog with callbacks - basically works but could do with more cleanup

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    /src/jalview/api/AlignExportSettingI.java
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    /src/jalview/datamodel/AlignExportSettingBeanI.java
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    /src/jalview/gui/AlignExportSettings.java
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    /src/jalview/gui/AlignFrame.java
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    /src/jalview/jbgui/GAlignExportSettings.java
JAL-3026 BH back online

Merge branch 'Jalview-BH/JAL-3026' of http://source.jalview.org/git/jalview into Jalview-BH/JAL-3026

JAL-3026 j2sNative fix for About.. panel/splashscreen : use JLabel rather than JTextPane and use <img> tag rather than mediaTracker to display jalview logo in about pane.

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    /src/jalview/gui/SplashScreen.java
JAL-3048 obsolete method deleted

JAL-3048 code reordered for JalviewJS compliance

JAL-3048 switch from 'dialogdata' to DialogRunner for load Features/Annotations/Otherdata (also needed File object passed through directly)

JAL-3048 adapt Cancel and refresh for JalviewJS

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    /src/jalview/gui/TextColourChooser.java
JAL-3033 unpack SwingJS last to ensure we always have the latest version of SwingJS in site/swingjs

JAL-3048 EditNameDialog modified for JalviewJS (layout, i18n)

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    /resources/lang/Messages_es.properties
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    /src/jalview/gui/AnnotationLabels.java
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    /src/jalview/gui/EditNameDialog.java
JAL-3032 BorderLayout renders panel correctly in JalviewJS

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    /src/jalview/gui/TextColourChooser.java
JAL-1858 separate method highlightSearchResults with fastPaint

JAL-3048 _no_ fastPaint when higlighting features, ever

JAL-3060 entry points for createFeatures, amendFeatures

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    /src/jalview/gui/FeatureEditor.java
Merge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git into Jalview-BH/JAL-3026

JAL-3060 extract FeatureEditor class

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    /src/jalview/gui/FeatureEditor.java
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    /src/jalview/gui/FeatureRenderer.java
JAL-3026 'dropins' !

JAL-3026 update README with instructions on setting up Eclipse for java2script and running unzip-to-site to update the site directory after a build.

JAL-3058 save modified colour from dialog

JAL-3033 hard reset to clean eclipse workspace before checking out