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pvtroshin <pvtroshin@e3abac25-378b-4346-85de-24260fe3988d> in jabaws

File puller tester

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4832 e3abac25-378b-4346-85de-24260fe3988d

word order

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4814 e3abac25-378b-4346-85de-24260fe3988d

load the driver explicitly

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4813 e3abac25-378b-4346-85de-24260fe3988d

AMI ID update

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4809 e3abac25-378b-4346-85de-24260fe3988d

web site minor tweaks

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4808 e3abac25-378b-4346-85de-24260fe3988d

web pages url updates

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4805 e3abac25-378b-4346-85de-24260fe3988d

Bug fix to the stat pages

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4802 e3abac25-378b-4346-85de-24260fe3988d

updated javadoc for the system as well as new redirect address for download app

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4793 e3abac25-378b-4346-85de-24260fe3988d

  1. … 822 more files in changeset.
remove old project javadoc

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4790 e3abac25-378b-4346-85de-24260fe3988d

  1. … 513 more files in changeset.
remove old datamodel javadoc

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4789 e3abac25-378b-4346-85de-24260fe3988d

    • -215
    • +0
    /website/dm_javadoc/allclasses-frame.html
  1. … 224 more files in changeset.
web pages updates to point to new download location also the redirect servlet

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4788 e3abac25-378b-4346-85de-24260fe3988d

    • -0
    • +23
    /webservices/compbio/stat/servlet/DownloadRedirector.java
  1. … 5 more files in changeset.
Fix for potential NullPointer exception if the results are an empty file

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4721 e3abac25-378b-4346-85de-24260fe3988d

remove a copy of category tester

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4708 e3abac25-378b-4346-85de-24260fe3988d

    • -72
    • +0
    /testsrc/compbio/test/CategoryTester.java
A few minor changes to the test

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4706 e3abac25-378b-4346-85de-24260fe3988d

    • -5
    • +5
    /testsrc/compbio/data/msa/CategoryTester.java
update binaries

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4705 e3abac25-378b-4346-85de-24260fe3988d

    • binary
    /website/archive/datamodel-src-2.0.jar
    • binary
    /website/archive/full-jaba-client-2.0.jar
    • binary
    /website/archive/jaba-client-src-2.0.jar
    • binary
    /website/archive/jaba-no-binaries.war
    • binary
    /website/archive/jabaws-src-2.0.jar
    • binary
    /website/archive/min-jaba-client-2.0.jar
Assign a test to an appropriate test category

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4704 e3abac25-378b-4346-85de-24260fe3988d

    • -2
    • +8
    /testsrc/compbio/data/msa/CategoryTester.java
Fix bug in category class and use Jim's test as a test case

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4703 e3abac25-378b-4346-85de-24260fe3988d

    • -0
    • +64
    /testsrc/compbio/data/msa/CategoryTester.java
    • -5
    • +5
    /webservices/compbio/data/msa/Category.java
  1. … 5 more files in changeset.
update build artefacts

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4701 e3abac25-378b-4346-85de-24260fe3988d

    • binary
    /website/archive/datamodel-src-2.0.jar
    • binary
    /website/archive/full-jaba-client-2.0.jar
    • binary
    /website/archive/jaba-client-src-2.0.jar
    • binary
    /website/archive/jaba-no-binaries.war
    • binary
    /website/archive/jabaws-src-2.0.jar
    • binary
    /website/archive/min-jaba-client-2.0.jar
Move Category into data.msa package from ws.server to get it into min jabaws package.

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4700 e3abac25-378b-4346-85de-24260fe3988d

    • -0
    • +114
    /webservices/compbio/data/msa/Category.java
    • -1
    • +0
    /webservices/compbio/data/msa/RegistryWS.java
    • -114
    • +0
    /webservices/compbio/ws/server/Category.java
JABAWS web site update - new logo and title page

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4655 e3abac25-378b-4346-85de-24260fe3988d

  1. … 4 more files in changeset.
change tracker code to compbio

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4652 e3abac25-378b-4346-85de-24260fe3988d

    • -2
    • +3
    /webservices/compbio/ws/server/GAUtils.java
Google Analytics statistics is added

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4651 e3abac25-378b-4346-85de-24260fe3988d

    • binary
    /WEB-INF/lib/compbio-ga-1.0.jar
    • binary
    /lib/src/compbio-ga-src-1.0.jar
    • -0
    • +82
    /webservices/compbio/ws/server/GAUtils.java
    • -3
    • +0
    /webservices/compbio/ws/server/LocalURL.txt
    • -3
    • +3
    /webservices/compbio/ws/server/MafftWS.java
    • -3
    • +3
    /webservices/compbio/ws/server/MuscleWS.java
    • -1
    • +13
    /webservices/compbio/ws/server/WSUtil.java
ga config file

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4650 e3abac25-378b-4346-85de-24260fe3988d

Changing of input type

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4648 e3abac25-378b-4346-85de-24260fe3988d

Web site updates

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4643 e3abac25-378b-4346-85de-24260fe3988d

  1. … 3 more files in changeset.
Remove test jobs from statistics

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4642 e3abac25-378b-4346-85de-24260fe3988d

    • -0
    • +4
    /testsrc/testdata/test_input.aln
    • -0
    • +4
    /testsrc/testdata/test_input.fasta
    • -6
    • +6
    /webservices/compbio/ws/client/WSTester.java
Service status pages update

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4592 e3abac25-378b-4346-85de-24260fe3988d

web site update new pages for awss beanstalk deployment

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4591 e3abac25-378b-4346-85de-24260fe3988d

    • binary
    /website/images/aws_bs_done.gif
    • binary
    /website/images/aws_bs_launch.gif
    • binary
    /website/images/aws_bs_launch1.gif
    • binary
    /website/images/aws_bs_launch2.gif
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    /website/images/aws_bs_launch3.gif
    • -0
    • +100
    /website/man_awscloud_bs.html
    • -0
    • +115
    /website/man_awscloud_ec2.html
  1. … 9 more files in changeset.
allow head method for all jabaws servlets

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4590 e3abac25-378b-4346-85de-24260fe3988d

add response to head method

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4589 e3abac25-378b-4346-85de-24260fe3988d