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gmungoc <g.m.carstairs@dundee.ac.uk> in jalview

JAL-3822 pass panel height and width to wrapped geometry calculations

    • -11
    • +167
    /test/jalview/gui/SeqPanelTest.java
JAL-2422 remove temporary patch (requires ChimeraX Daily or 1.2 build)

JAL-3818 process Jmol callbacks in AWT thread

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    • +206
    /src/jalview/ext/jmol/JalviewJmolBinding.java
JAL-3818 process Jmol callbacks in AWT thread

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    • +47
    /src/jalview/ext/jmol/JalviewJmolBinding.java
JAL-2422 updated unit test for ChimeraX command change

JAL-2422 a fix and a fudge for two failing ChimeraX commands

JAL-3806 fix and test for one-to-many sequence mapping case

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    • +111
    /test/jalview/util/MappingUtilsTest.java
JAL-3806 more lax allowance (3 positions) for stop codon

JAL-3038 corrected code that reads editable JComboBox text input

JAL-3117 raise AlignFrame or SplitFrame when Overview clicked

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    • +33
    /src/jalview/gui/AlignFrame.java
    • -50
    • +63
    /src/jalview/gui/AlignmentPanel.java
    • -5
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    /src/jalview/gui/ViewSelectionMenu.java
    • -14
    • +14
    /src/jalview/jbgui/GAlignFrame.java
    • -1
    • +1
    /test/jalview/gui/FreeUpMemoryTest.java
JAL-3788 synchronize concurrent findColour() and alignmentChanged()

JAL-3788 synchronize concurrent findColour() and alignmentChanged()

JAL-3761 more consistent parameter naming

JAL-3761 more consistent parameter naming

JAL-1713 restore project with no Overview, regardless of Preferences

JAL-1713 close and replace auto-opened Overview with restored Overview

    • -0
    • +12
    /src/jalview/gui/AlignmentPanel.java
    • -153
    • +166
    /src/jalview/project/Jalview2XML.java
JAL-3117 bring alignment to foreground on click on Overview

JAL-1713 unit test for save/restore Overview in project

JAL-1713 renamed method to OverviewPanel.get/setFrameBounds()

JAL-1713 JAL-3119 JAL-3785 refactored get/set Overview bounds and title

    • -35
    • +15
    /src/jalview/gui/AlignFrame.java
    • -39
    • +65
    /src/jalview/gui/AlignmentPanel.java
    • -38
    • +91
    /src/jalview/gui/OverviewPanel.java
    • -1
    • +41
    /test/jalview/gui/AlignmentPanelTest.java
JAL-3785 set full title on automatically opened Overview windows

JAL-3612 use _last_ drawn colour per feature type in Overview

JAL-1713 fix typo; overview in project with open overview in preferences

JAL-3784 null the right overview reference when it is closed

JAL-1713 read/set OverviewPanel geometry on parent JInternalFrame

    • -11
    • +8
    /src/jalview/project/Jalview2XML.java
JAL-1713 save Overview title in project, don't save Overview on New View

    • -15
    • +34
    /src/jalview/project/Jalview2XML.java
JAL-3119 include view name (if any) in Overview title

JAL-1713 save/restore Overview in project (todo: restore geometry)

    • -0
    • +32
    /src/jalview/project/Jalview2XML.java
JAL-1713 refactorings to allow save/restore Overview to/from project

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    • +54
    /src/jalview/gui/OverviewCanvas.java
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    • +21
    /src/jalview/gui/OverviewPanel.java
    • -30
    • +23
    /src/jalview/gui/Preferences.java
    • -45
    • +59
    /src/jalview/renderer/OverviewResColourFinder.java
JAL-1713 schema and JAXB changes to save Overview in project file