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hansonr <hansonr@geoff_surface> in jalview

not related to JAL-3765 ! Actually related to JAL-3675!

not related to JAL-3765 ! Actually related to JAL-3675!

relevant issue is JAL-3626

relevant issue is JAL-3626

Would be nicer. Currently the getdown-launcher is agnostic of which CHANNEL the Jalview version it's in was created with. This seemed like a quick way to achieve almost the same, but longer term a ...

Would be nicer. Currently the getdown-launcher is agnostic of which CHANNEL the Jalview version it's in was created with.
This seemed like a quick way to achieve almost the same, but longer term a getdown created visibile indicator would be ideal. I'll create an issue.

Hi Ben Soares - maybe nicer to have these generated by the getdown launcher in the future ? Worth an issue perhaps ?

Hi Ben Soares - maybe nicer to have these generated by the getdown launcher in the future ? Worth an issue perhaps ?

Ben Soares reported JAL-3514 about this build

Ben Soares reported JAL-3514 about this build

why are loops in removeAlreadyRetrievedSeqs now backwards?

why are loops in removeAlreadyRetrievedSeqs now backwards?

Merge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git into Jalview-BH/JAL-3026

JAL-3026 all tabbed panes use JavaScript option jalview.jbui.swing.JTabbedPane

    • -1
    • +1
    /src/jalview/jbgui/GRestServiceEditorPane.java
    • -1
    • +1
    /src/jalview/jbgui/GStructureChooser.java
    • -0
    • +474
    /src/jalview/jbgui/swing/JTabbedPane.java
JAL-3026 moves javajs to srcjars

- important because Java is using older code from the Jmol jar file

    • -15
    • +0
    /src/javajs/api/EigenInterface.java
    • -40
    • +0
    /src/javajs/api/GenericBinaryDocument.java
    • -45
    • +0
    /src/javajs/api/GenericCifDataParser.java
    • -9
    • +0
    /src/javajs/api/GenericImageDialog.java
    • -12
    • +0
    /src/javajs/api/GenericImageEncoder.java
    • -5
    • +0
    /src/javajs/api/GenericLineReader.java
    • -22
    • +0
    /src/javajs/api/GenericOutputChannel.java
    • -13
    • +0
    /src/javajs/api/GenericZipInputStream.java
  1. … 158 more files in changeset.
JAL-3026 comment in main test method in PDbFtsrestClient.java

JAL-3026 renaming build-zip-jars.xml to build-libjs.xml

this file is only to be used when new jar contents are tanspiled into

JavaScript. Preferably add these to src2, compile, and remove them from

src2. This could certainly be automated.

removing temp files for build of libjs

    • -147
    • +0
    /src/org/json/simple/ItemList.java
    • -381
    • +0
    /src/org/json/simple/JSONArray.java
    • -12
    • +0
    /src/org/json/simple/JSONAware.java
    • -132
    • +0
    /src/org/json/simple/JSONObject.java
    • -15
    • +0
    /src/org/json/simple/JSONStreamAware.java
    • -316
    • +0
    /src/org/json/simple/JSONValue.java
    • -110
    • +0
    /src/org/json/simple/parser/ContentHandler.java
    • -611
    • +0
    /src/org/json/simple/parser/JSONParser.java
    • -90
    • +0
    /src/org/json/simple/parser/ParseException.java
    • -758
    • +0
    /src/org/json/simple/parser/Yylex.java
    • -58
    • +0
    /src/org/json/simple/parser/Yytoken.java
srcjar changes for JSONParser - just 'c' |'c' workaround (not necessary after next transpiler update

    • -510
    • +588
    /srcjar/org/json/simple/parser/JSONParser.java
    • -144
    • +214
    /srcjar/org/json/simple/parser/Yylex.java
Merge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git into Jalview-BH/JAL-3026

Merge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git into Jalview-BH/JAL-3026

JAL-3026 fixes MigLayout, JSON parser

MiG layout was referencing java.beans only for serialization

JSONParser was using a bitwise syntax for char not supported in

transpiler

SwingJS jalview.javascript.web proxy for WebResources not set up

properly

- JSONParser is working

- PDB REST service call is working

- MiGLayout is loading, but is not laying out properly.

    • -0
    • +10
    /src/net/miginfocom/README_SWINGJS.txt
    • -0
    • +571
    /src/net/miginfocom/layout/AC.java
    • -0
    • +107
    /src/net/miginfocom/layout/AnimSpec.java
    • -0
    • +375
    /src/net/miginfocom/layout/BoundSize.java
    • -0
    • +1880
    /src/net/miginfocom/layout/CC.java
    • -0
    • +305
    /src/net/miginfocom/layout/ComponentWrapper.java
    • -0
    • +1481
    /src/net/miginfocom/layout/ConstraintParser.java
    • -0
    • +69
    /src/net/miginfocom/layout/ContainerWrapper.java
    • -0
    • +477
    /src/net/miginfocom/layout/DimConstraint.java
    • -0
    • +2496
    /src/net/miginfocom/layout/Grid.java
  1. … 16 more files in changeset.