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hansonr <hansonr@geoff_surface> in jalview

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10 commits
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  • First commit: 05 July 2018
  • Last commit: 06 July 2018
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Monday 19 Oct 2020
11:59 am

Jim Procter

not related to JAL-3765 ! Actually related to JAL-3675!

not related to JAL-3765 ! Actually related to JAL-3675!

Friday 22 May 2020
11:37 am

Jim Procter

relevant issue is JAL-3626

relevant issue is JAL-3626

Thursday 09 Apr 2020
2:34 pm

Ben Soares

Would be nicer. Currently the getdown-launcher is agnostic of which CHANNEL the Jalview version it's in was created with. This seemed like a quick way to achieve almost the same, but longer term a ...

Would be nicer. Currently the getdown-launcher is agnostic of which CHANNEL the Jalview version it's in was created with.
This seemed like a quick way to achieve almost the same, but longer term a getdown created visibile indicator would be ideal. I'll create an issue.

12:07 pm

Jim Procter

Hi Ben Soares - maybe nicer to have these generated by the getdown launcher in the future ? Worth an issue perhaps ?

Hi Ben Soares - maybe nicer to have these generated by the getdown launcher in the future ? Worth an issue perhaps ?

Wednesday 05 Feb 2020
11:50 am

Jim Procter

Ben Soares reported JAL-3514 about this build

Ben Soares reported JAL-3514 about this build

Friday 01 Feb 2019
2:23 pm

Mungo Carstairs

why are loops in removeAlreadyRetrievedSeqs now backwards?

why are loops in removeAlreadyRetrievedSeqs now backwards?

Friday 06 Jul 2018
8:59 am

hansonr <hansonr@Geoff_Surface>

Merge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git into Jalview-BH/JAL-3026

Options
8:58 am

hansonr <hansonr@Geoff_Surface>

JAL-3026 all tabbed panes use JavaScript option jalview.jbui.swing.JTabbedPane

Options
    • binary
    /libjs/MiGLayout-site.zip
    • -2
    • +3
    /src/jalview/fts/core/GFTSPanel.java
    • -1
    • +1
    /src/jalview/gui/WebserviceInfo.java
    • -1
    • +1
    /src/jalview/jbgui/GAlignFrame.java
    • -1
    • +1
    /src/jalview/jbgui/GPreferences.java
    • -1
    • +1
    /src/jalview/jbgui/GRestServiceEditorPane.java
    • -1
    • +1
    /src/jalview/jbgui/GStructureChooser.java
    • -0
    • +474
    /src/jalview/jbgui/swing/JTabbedPane.java
    • binary
    /swingjs/SwingJS-site.zip
Thursday 05 Jul 2018
11:20 am

hansonr <hansonr@Geoff_Surface>

JAL-3026 moves javajs to srcjars

- important because Java is using older code from the Jmol jar file

Options
    • binary
    /libjs/jsonsimple-site.zip
    • -7
    • +0
    /src/javajs/J2SIgnoreImport.java
    • -7
    • +0
    /src/javajs/J2SRequireImport.java
    • -38
    • +0
    /src/javajs/_README.txt
    • -7
    • +0
    /src/javajs/api/BytePoster.java
    • -15
    • +0
    /src/javajs/api/EigenInterface.java
    • -40
    • +0
    /src/javajs/api/GenericBinaryDocument.java
    • -25
    • +0
    /src/javajs/api/GenericBinaryDocumentReader.java
    • -45
    • +0
    /src/javajs/api/GenericCifDataParser.java
    • -19
    • +0
    /src/javajs/api/GenericColor.java
    • -9
    • +0
    /src/javajs/api/GenericImageDialog.java
    • -12
    • +0
    /src/javajs/api/GenericImageEncoder.java
    • -5
    • +0
    /src/javajs/api/GenericLineReader.java
    • -22
    • +0
    /src/javajs/api/GenericOutputChannel.java
    • -13
    • +0
    /src/javajs/api/GenericZipInputStream.java
  16. … 158 more files in changeset.
10:50 am

hansonr <hansonr@Geoff_Surface>

JAL-3026 comment in main test method in PDbFtsrestClient.java

Options
    • -2
    • +5
    /src/jalview/fts/service/pdb/PDBFTSRestClient.java
10:41 am

hansonr <hansonr@Geoff_Surface>

JAL-3026 renaming build-zip-jars.xml to build-libjs.xml

this file is only to be used when new jar contents are tanspiled into

JavaScript. Preferably add these to src2, compile, and remove them from

src2. This could certainly be automated.

Options
    • -0
    • +51
    /build-libjs.xml
    • -51
    • +0
    /build-zip-jars.xml
10:39 am

hansonr <hansonr@Geoff_Surface>

removing temp files for build of libjs

Options
    • -1
    • +0
    /.classpath
    • -0
    • +74
    /.classpath.all
    • -0
    • +1
    /.gitignore
    • -147
    • +0
    /src/org/json/simple/ItemList.java
    • -381
    • +0
    /src/org/json/simple/JSONArray.java
    • -12
    • +0
    /src/org/json/simple/JSONAware.java
    • -132
    • +0
    /src/org/json/simple/JSONObject.java
    • -15
    • +0
    /src/org/json/simple/JSONStreamAware.java
    • -316
    • +0
    /src/org/json/simple/JSONValue.java
    • -4
    • +0
    /src/org/json/simple/README.txt
    • -23
    • +0
    /src/org/json/simple/parser/ContainerFactory.java
    • -110
    • +0
    /src/org/json/simple/parser/ContentHandler.java
    • -611
    • +0
    /src/org/json/simple/parser/JSONParser.java
    • -90
    • +0
    /src/org/json/simple/parser/ParseException.java
    • -758
    • +0
    /src/org/json/simple/parser/Yylex.java
    • -58
    • +0
    /src/org/json/simple/parser/Yytoken.java
10:38 am

hansonr <hansonr@Geoff_Surface>

srcjar changes for JSONParser - just 'c' |'c' workaround (not necessary after next transpiler update

Options
    • -510
    • +588
    /srcjar/org/json/simple/parser/JSONParser.java
    • -144
    • +214
    /srcjar/org/json/simple/parser/Yylex.java
10:23 am

hansonr <hansonr@Geoff_Surface>

Merge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git into Jalview-BH/JAL-3026

Options
9:38 am

hansonr <hansonr@Geoff_Surface>

Merge branch 'Jalview-BH/JAL-3026' of https://source.jalview.org/git/jalview.git into Jalview-BH/JAL-3026

Options
    • -28
    • +9
    /src/jalview/gui/Preferences.java
9:35 am

hansonr <hansonr@Geoff_Surface>

JAL-3026 fixes MigLayout, JSON parser

MiG layout was referencing java.beans only for serialization

JSONParser was using a bitwise syntax for char not supported in

transpiler

SwingJS jalview.javascript.web proxy for WebResources not set up

properly

- JSONParser is working

- PDB REST service call is working

- MiGLayout is loading, but is not laying out properly.

Options
    • -2
    • +2
    /src/jalview/fts/core/FTSDataColumnPreferences.java
    • -5
    • +38
    /src/jalview/fts/service/pdb/PDBFTSRestClient.java
    • -1
    • +2
    /src/jalview/gui/Preferences.java
    • -3
    • +3
    /src/jalview/javascript/web/ClientResponse.java
    • -4
    • +7
    /src/jalview/javascript/web/WebResource.java
    • -0
    • +10
    /src/net/miginfocom/README_SWINGJS.txt
    • -0
    • +571
    /src/net/miginfocom/layout/AC.java
    • -0
    • +107
    /src/net/miginfocom/layout/AnimSpec.java
    • -0
    • +375
    /src/net/miginfocom/layout/BoundSize.java
    • -0
    • +1880
    /src/net/miginfocom/layout/CC.java
    • -0
    • +305
    /src/net/miginfocom/layout/ComponentWrapper.java
    • -0
    • +1481
    /src/net/miginfocom/layout/ConstraintParser.java
    • -0
    • +69
    /src/net/miginfocom/layout/ContainerWrapper.java
    • -0
    • +477
    /src/net/miginfocom/layout/DimConstraint.java
    • -0
    • +2496
    /src/net/miginfocom/layout/Grid.java
  16. … 16 more files in changeset.