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jim procter <j.procter@dundee.ac.uk> in jalview

Merge branch 'patch/JAL-4008_jabaws_2_2_1_patch' into doc/release_2_11_2_3

JAL-4012 JAL-4008 release notes for Jalview 2.11.2.3

JAL-4008 update jabaws client to 2.2.1 - definitely no log4j references !

    • binary
    /j11lib/jabaws-min-client-NO_LOG4J-2.2.0.jar
    • binary
    /j11lib/jabaws-min-client-NO_LOG4J-2.2.1.jar
    • binary
    /j8lib/jabaws-min-client-NO_LOG4J-2.2.0.jar
    • binary
    /j8lib/jabaws-min-client-NO_LOG4J-2.2.1.jar
Merge branch 'develop' into releases/Release_2_11_2_Branch

JAL-3992 bump version and report updates in 2.11.2.2 release notes

Merge branch 'bug/JAL-3997_NPE_in_wrapped_mode' into develop

Merge branch 'bug/JAL-3365_extendedDSSP_via_stockholm' into develop

JAL-3365 the correct Pfam ID

    • binary
    /examples/PF01426_full.stk
    • -1
    • +1
    /test/jalview/io/StockholmFileTest.java
JAL-3997 check for tooltip being null before checking equivalence to last tooltip string

Merge branch 'task/JAL-3992_update_docs' into bug/JAL-3365_extendedDSSP_via_stockholm

JAL-3992 fix path

    • -1
    • +1
    /help/help/html/features/cursorMode.html
JAL-3365 per-sequence secondary structure symbol ‘X’ is not properly exported and reimported

    • binary
    /examples/PF001426_full.stk
    • -0
    • +3
    /test/jalview/io/StockholmFileTest.java
JAL-3365 expand range of allowed DSSP secondary structure symbols in Stockholm files

    • -0
    • +12
    /test/jalview/io/StockholmFileTest.java
JAL-3992 shift+arrow to jump to next gap/residue in cursor/keyboard editing mode

    • -8
    • +12
    /help/help/html/features/cursorMode.html
Merge branch 'develop' into releases/Release_2_11_2_Branch

JAL-3990 release notes and what’s new

Merge branch 'develop' into releases/Release_2_11_2_Branch

JAL-3981 patch tests and remove errant imports

Merge branch 'develop' into releases/Release_2_11_2_Branch

JAL-3990 gradle spotlessApply

JAL-3990 release notes for 2.11.2.1 patch release

Merge branch 'bug/JAL-3980_JAL-3981_tooltips_sequence_details' into develop

Merge branch 'develop' into releases/Release_2_11_2_Branch

JAL-3983 release note for JAL-3985

Merge branch 'bug/JAL-3085_avoid_414_error_for_PDBFTS' into develop

JAL-3085 update tests and mock responses, new P0dtd1 testcase

JAL-3985 formatting

JAL-3985 split PDB id queries into multiple queries so server doesn’t 414

Merge branch 'patch/JAL-3976_3dbeaconsnull' into develop

JAL-3976 fix mock PDBFTS query & responses