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jim procter <jprocter@compbio.dundee.ac.uk> in jalview

not related to JAL-3765 ! Actually related to JAL-3675!

not related to JAL-3765 ! Actually related to JAL-3675!

relevant issue is JAL-3626

relevant issue is JAL-3626

Would be nicer. Currently the getdown-launcher is agnostic of which CHANNEL the Jalview version it's in was created with. This seemed like a quick way to achieve almost the same, but longer term a ...

Would be nicer. Currently the getdown-launcher is agnostic of which CHANNEL the Jalview version it's in was created with.
This seemed like a quick way to achieve almost the same, but longer term a getdown created visibile indicator would be ideal. I'll create an issue.

Hi Ben Soares - maybe nicer to have these generated by the getdown launcher in the future ? Worth an issue perhaps ?

Hi Ben Soares - maybe nicer to have these generated by the getdown launcher in the future ? Worth an issue perhaps ?

Ben Soares reported JAL-3514 about this build

Ben Soares reported JAL-3514 about this build

why are loops in removeAlreadyRetrievedSeqs now backwards?

why are loops in removeAlreadyRetrievedSeqs now backwards?

Merge branch 'JAL-1226' into develop

Merge branch 'JAL-1226' into Release_2_8_1_Branch_i18n

Merge branch 'JAL-1226' into Release_2_8_1_Branch

fix for JAL-1226

Merge branch 'JAL-686' into Release_2_8_1_Branch_i18n

Merge branch 'JAL-686' into develop

Merge branch 'JAL-686' into Release_2_8_1_Branch

JAL-1457 refactoring to explore why '-' appear in annotation rows (see AlignmentAnnotation.padGaps)

fix for JAL-686 - don't trim spaces before creating annotation

Merge branch 'Release_2_8_1_Branch' into Release_2_8_1_Branch_i18n

Merge branch 'JAL-1454_patch' into develop

Merge branch 'JAL-1454_patch' into Release_2_8_1_Branch

JAL-1355 typo in key

Merge branch 'JAL-1454_patch' into Release_2_8_1_Branch

JAL-1454 catch exceptions during calculation and report any warnings in the PCA 'Output values...' dump.

JAL-1454 increase max for tqli iterations and throw exception rather than call System.exit()

Merge branch 'JAL-1364_patch' into develop

Merge branch 'JAL-1364_patch' into Release_2_8_1_Branch

patch for JAL-1449 - continuance of JAL-1364 - check bounds of gapMap - not the VIENNA results

    • -2
    • +6
    /src/jalview/ws/jws2/RNAalifoldClient.java
Merge branch 'Release_2_8_1_Branch' into Release_2_8_1_Branch_i18n

Merge branch 'pathc_JAL-1354' into develop

Merge branch 'pathc_JAL-1354' into Release_2_8_1_Branch

JAL-1448 reinstate non-locale sensitive code for reading/writing last read date from RSS and Jalview preferences