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jim procter <jprocter@issues.jalview.org> in jalview

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3,075 commits
  • Mapped user: Jim Procter
  • First commit: 23 October 2014
  • Last commit: 20 July 2021
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Tuesday 20 Jul 2021
11:08 am

Jim Procter

JAL-3848 patched SwingJS runtime rebuilt

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    • binary
    /swingjs/SwingJS-site.zip
Monday 19 Jul 2021
10:54 am

Jim Procter

JAL-3848 j2s 3.2.10-v1 slivka-java-client jslib

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    • binary
    /utils/jalviewjs/libjs/slivka-client-site.zip
Wednesday 14 Jul 2021
4:17 pm

Jim Procter

JAL-3848 nominal build of slivka 0.8 compatible java client library

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    • binary
    /utils/jalviewjs/libjs/slivka-client-site.zip
Wednesday 09 Jun 2021
6:06 pm

Jim Procter

JAL-3842 2.11.1.5 what’s new, release notes, and version bump

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    /RELEASE
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    /help/help/html/releases.html
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    /help/help/html/whatsNew.html
5:38 pm

Jim Procter

Merge branch 'patch/JAL-3840_2_11_1_4' into releases/Release_2_11_1_Branch

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4:53 pm

Jim Procter

JAL-3840 don’t update the modal residue count for gaps

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    /src/jalview/datamodel/ResidueCount.java
4:53 pm

Jim Procter

JAL-3840 don’t update the modal residue count for gaps

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    • +6
    /src/jalview/datamodel/ResidueCount.java
4:40 pm

Jim Procter

fixes JAL-3840

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    /src/jalview/datamodel/ResidueCount.java
4:40 pm

Jim Procter

fixes JAL-3840

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    /src/jalview/datamodel/ResidueCount.java
4:35 pm

Jim Procter

JAL-3840 failing test - show that addGaps overflows

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    /src/jalview/datamodel/ResidueCount.java
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    /test/jalview/datamodel/ResidueCountTest.java
4:35 pm

Jim Procter

JAL-3840 failing test - show that addGaps overflows

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    /src/jalview/datamodel/ResidueCount.java
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    /test/jalview/datamodel/ResidueCountTest.java
Tuesday 06 Apr 2021
3:23 pm

Jim Procter

JAL-3929 forgot to add in the dummy 3d-beacons db proxy

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    /src/jalview/ws/dbsources/TDBeacons.java
3:23 pm

Jim Procter

JAL-3829 forgot to add in the dummy 3d-beacons db proxy

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    • +521
    /src/jalview/ws/dbsources/TDBeacons.java
3:04 pm

Jim Procter

JAL-3832 dummy 3d-beacons database client and code to create the TDBeaconsFTSPanel via the sequence fetcher dropdown menu

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    /src/jalview/gui/SequenceFetcher.java
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    /src/jalview/ws/SequenceFetcher.java
Monday 15 Mar 2021
10:29 am

Jim Procter

Merge branch 'releases/Release_2_11_1_Branch'

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Tuesday 09 Mar 2021
1:03 pm

Jim Procter

JAL-3816 release date updated to 9th March

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    /help/help/html/releases.html
Friday 05 Mar 2021
6:19 pm

Jim Procter

JAL-3816 release date set for 8th March and updated what's new

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    /help/help/html/releases.html
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    /help/help/html/whatsNew.html
5:44 pm

Jim Procter

JAL-3816 new known defects JAL-3705 and JAL-3806

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    /help/help/html/releases.html
Thursday 04 Mar 2021
11:44 am

Jim Procter

Revert "Merge branch 'bug/JAL-3806_mappingCoversSequence' into releases/Release_2_11_1_Branch"

This reverts commit cb628aab46f9027e71b71203b322f96710e09990, reversing

changes made to a40669b2eeb34a6c760b63c172a31a194b456f24.

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    /src/jalview/datamodel/AlignedCodonFrame.java
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    /src/jalview/util/MappingUtils.java
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    /test/jalview/util/MappingUtilsTest.java
11:39 am

Jim Procter

Revert "JAL-3816 release notes for JAL-3806"

This reverts commit ead40d75a04715c80c61e34e277bb995cb2bef90.

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    /help/help/html/releases.html
Friday 26 Feb 2021
3:02 pm

Jim Procter

JAL-3816 release notes for JAL-3806

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    /help/help/html/releases.html
2:02 pm

Jim Procter

Merge branch 'bug/JAL-3806_mappingCoversSequence' into releases/Release_2_11_1_Branch

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1:55 pm

Jim Procter

JAL-3816 JAL-3814 JAL-3813 JAL-3812 JAL-3811 JAL-3818 release notes and date for 2.11.1.4 release

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    /help/help/html/releases.html
Wednesday 24 Feb 2021
4:49 pm

Jim Procter

Merge branch 'bug/JAL-3818_jmolDeadlock' into releases/Release_2_11_1_Branch

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4:48 pm

Jim Procter

Merge branch 'releases/Release_2_11_1_4_debianpatches' into releases/Release_2_11_1_Branch

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Wednesday 17 Feb 2021
5:16 pm

Jim Procter

JAL-3821 patch for 2.11.2 to retrieve RNA ENA records as RNA

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    /src/jalview/io/EmblFlatFile.java
4:27 pm

Jim Procter

Merge branch 'feature/JAL-3692enaEndpoint' into patch/for2.11.2/JAL-3821_ena_rna_moltype

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    /resources/lang/Messages.properties
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    /resources/lang/Messages_es.properties
4:08 pm

Jim Procter

JAL-3821 rough and ready patch translates t/T to u/U when mol_type includes rna

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    /src/jalview/io/EmblFlatFile.java
Sunday 07 Feb 2021
4:06 pm

Jim Procter

JAL-3816 bump version number and cut release notes

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    /RELEASE
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    /doc/building.html
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    /help/help/html/releases.html
4:05 pm

Jim Procter

JAL-3815 default /etc/jalview_properties under utils/debian

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    /utils/debian/etc/jalview_properties