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jprocter <jprocter@dundee.ac.uk> in jalview

not related to JAL-3765 ! Actually related to JAL-3675!

not related to JAL-3765 ! Actually related to JAL-3675!

relevant issue is JAL-3626

relevant issue is JAL-3626

Would be nicer. Currently the getdown-launcher is agnostic of which CHANNEL the Jalview version it's in was created with. This seemed like a quick way to achieve almost the same, but longer term a ...

Would be nicer. Currently the getdown-launcher is agnostic of which CHANNEL the Jalview version it's in was created with.
This seemed like a quick way to achieve almost the same, but longer term a getdown created visibile indicator would be ideal. I'll create an issue.

Hi Ben Soares - maybe nicer to have these generated by the getdown launcher in the future ? Worth an issue perhaps ?

Hi Ben Soares - maybe nicer to have these generated by the getdown launcher in the future ? Worth an issue perhaps ?

Ben Soares reported JAL-3514 about this build

Ben Soares reported JAL-3514 about this build

why are loops in removeAlreadyRetrievedSeqs now backwards?

why are loops in removeAlreadyRetrievedSeqs now backwards?

Merge branch 'JAL-1459_dnd' into develop

Merge branch 'JAL-1400_sandboxapp' into Release_2_8_Branch working examples for signed sandboxed applet

JAL-957 JAL-1400 unsigned applet examples

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    /examples-jbake/content/u_applets.html
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    /examples-jbake/content/u_embedded.html
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    /examples-jbake/content/u_embeddedWJmol.html
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    /examples-jbake/content/u_formComplete.html
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    /examples-jbake/content/u_javascriptLaunch.html
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    /examples-jbake/content/u_linkedapplets_ng.html
JAL-957 JAL-1400 use signed/unsigned applet as needed

JAL-957 JAL-1400 JAL-1407 signed and unsigned jalviewApplet example links.

JAL-957 tidy up formatting

JAL-957 javascript api documentation page

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    /examples-jbake/content/jalviewLiteJs.html
JAL-957 macro-ise the sidebar generation loop and add mechanism for linking to signed/unsigned version of the applet example pages

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    /examples-jbake/templates/sidebar.ftl
JAL-957 only include content body for 'normal' pages - workaround an apparent FreeMarker bug causing metadata to be included in content body

JAL-957 fix layout of pages

formatting

JAL-1400 numeric version numbers only for minimum jre compatibility

Merge branch 'JAL-1400_sandboxapp' into Release_2_8_Branch

JAL-1400 still fixing JmolApplet manifest issue

Merge branch 'JAL-1400_sandboxapp' into Release_2_8_Branch

Merge branch 'JAL-1400_sandboxapp' into Release_2_8_Branch

JAL-1400 default JalviewLite build is signed applet with sandbox permissions