Review
|
CR-JAL-147
|
Koen van der Heide
|
JAL-281: Load tree from URL
|
27 |
3 years and 1 month
|
|
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Review
|
CR-JAL-148
|
Jim Procter
|
Review patches from develop for Release 2.10.3b1
|
17 |
3 years and 1 month
|
|
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Review
|
CR-JAL-149
|
Kira MourĂ£o
|
JAL-2674 Transferred updated unit tests from first 2674 branch
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75 |
3 years
|
|
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Review
|
CR-JAL-150
|
Mungo Carstairs
|
JAL-984 better behaved panel height adjuster
|
4 |
3 years
|
|
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Review
|
CR-JAL-151
|
Mungo Carstairs
|
JAL-2666 basic initial fix for split screen scroll bug
|
4 |
3 years
|
|
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Review
|
CR-JAL-152
|
Mungo Carstairs
|
JAL-2885: Update uniprot.org endpoints to https (by 20th June 2018)
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20 |
3 years
|
|
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Review
|
CR-JAL-153
|
Mungo Carstairs
|
JAL-2930: Trackpad scroll right or down is broken in Java >= 1.8.0u152
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4 |
2 years and 11 months
|
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Review
|
CR-JAL-155
|
Jim Procter
|
JAL-2944: Allow structures to be opened in a specific structure view
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8 |
2 years and 10 months
|
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Review
|
CR-JAL-156
|
Jim Procter
|
JAL-1847: Allow multiple PDB structures to be shown without performing...
|
7 |
2 years and 10 months
|
|
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Review
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CR-JAL-157
|
Mungo Carstairs
|
JAL-2899: Threshold change in Colour by Annotation doesn't update...
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3 |
2 years and 10 months
|
|
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Review
|
CR-JAL-159
|
Mungo Carstairs
|
JAL-2997: Improve the Clustal format parser so that it can cope with...
|
5 |
2 years and 9 months
|
|
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Review
|
CR-JAL-162
|
Mungo Carstairs
|
JAL-2956: Persist HMMER profile(s) in Jalview project
|
7 |
2 years and 9 months
|
|
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Review
|
CR-JAL-163
|
Mungo Carstairs
|
JAL-2994: Try harder to locate Chimera executable on windows platforms
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3 |
2 years and 8 months
|
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Review
|
CR-JAL-164
|
Jim Procter
|
JAL-3048 jalview.utils.dialogrunner.DialogRunner allows sequences of...
|
11 |
2 years and 8 months
|
|
|
Review
|
CR-JAL-166
|
Jim Procter
|
JAL-3035: Remove dependency on jdas client library
|
44 |
2 years and 7 months
|
|
|
Review
|
CR-JAL-167
|
Ben Soares
|
JAL-3065
|
7 |
2 years and 7 months
|
|
|
Review
|
CR-JAL-169
|
Mungo Carstairs
|
JAL-3076 fetch Ensembl sequence as JSON instead of Fasta
|
22 |
2 years and 6 months
|
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Review
|
CR-JAL-171
|
Mungo Carstairs
|
JAL-3132 set status message when over sequence id or annotation label
|
9 |
2 years and 4 months
|
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Review
|
CR-JAL-172
|
Ben Soares
|
JAL-3141 Backup files being created with default suffix up to 10...
|
34 |
2 years and 4 months
|
|
|
Review
|
CR-JAL-175
|
Jim Procter
|
JAL-3127: Shade mapped structures or alignment by Sequence's ID colour
|
52 |
2 years and 3 months
|
|
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Review
|
CR-JAL-176
|
Ben Soares
|
JAL-3174 Merging in some test filename-case fixes
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2 |
2 years and 2 months
|
|
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Review
|
CR-JAL-177
|
Mungo Carstairs
|
JAL-2791 and JAL-3125 Select/export visible features only and avoid...
|
11 |
2 years and 2 months
|
|
|
Review
|
CR-JAL-178
|
Mungo Carstairs
|
JAL-3184 restore group visibility on Cancel in Feature Settings
|
2 |
2 years and 1 month
|
|
|
Review
|
CR-JAL-181
|
Bob Hanson
|
JAL-3253: Refactor and prototype JalviewJS.Desktop to run embedded in...
|
329 |
21 months
|
|
|
Review
|
CR-JAL-184
|
Jim Procter
|
JAL-3274: Embed build details in JalviewJS builds
|
3 |
21 months
|
|
|
Review
|
CR-JAL-185
|
Thomas van Aalten
|
JAL-3297: HMMAlign failing due to HMM consensus sequence being a...
|
2 |
20 months
|
|
|
Review
|
CR-JAL-186
|
Mungo Carstairs
|
JAL-3212 more use of av.getAbsoluteColumn, and unit tests
|
6 |
20 months
|
|
|
Review
|
CR-JAL-187
|
Ben Soares
|
JAL-3348 prepping getdown to pass JVM command line args
|
12 |
19 months
|
|
|
Review
|
CR-JAL-188
|
Bob Hanson
|
JAL-3383: Speed up OverviewPanel rendering in JavaScript
|
66 |
18 months
|
|
|
Review
|
CR-JAL-189
|
Ben Soares
|
JAL-3477: Default memory selection should have a maximum value
|
21 |
14 months
|
|
|
Review
|
CR-JAL-190
|
Mungo Carstairs
|
JAL-3489: Not all chains mapped for multimeric structure loaded from...
|
3 |
13 months
|
|
|
Review
|
CR-JAL-191
|
Mungo Carstairs
|
JAL-3081: Let manual annotation ordering take precedence over...
|
19 |
13 months
|
|
|
Review
|
CR-JAL-193
|
Mungo Carstairs
|
JAL-3121: Allow export/import of map-value feature attributes via GFF3
|
15 |
13 months
|
|
|
Review
|
CR-JAL-195
|
Mateusz Warowny
|
JAL-3515 Extract core WSDiscoverer methods to a separate interface
|
8 |
12 months
|
|
|
Review
|
CR-JAL-197
|
Mateusz Warowny
|
JAL-3515 Build a WSPreferences page for Slivka services.
|
3 |
12 months
|
|
|
Review
|
CR-JAL-198
|
Mungo Carstairs
|
JAL-3509 coerce RESNUM to hidden (really) after fetching from PDB
|
16 |
12 months
|
|
|
Review
|
CR-JAL-199
|
Mungo Carstairs
|
JAL-3376: Record 'fixed column' values from VCF
|
2 |
12 months
|
|
|
Review
|
CR-JAL-200
|
Mungo Carstairs
|
JAL-3375: Better VCF numeric data field validation while parsing (e.g...
|
3 |
12 months
|
|
|
Review
|
CR-JAL-201
|
Mungo Carstairs
|
JAL-3251 SequenceToSequenceMapping now SequenceMapping, MappingType++
|
13 |
12 months
|
|
|
Review
|
CR-JAL-202
|
Mungo Carstairs
|
JAL-3121 'attributes map' in GFF3 without special 'jvmap_' token
|
8 |
12 months
|
|
|
Review
|
CR-JAL-204
|
Ben Soares
|
JAL-3477 New sensible default decisions on memory, and new jvmmemmax...
|
23 |
12 months
|
|
|
Review
|
CR-JAL-205
|
Jim Procter
|
JAL-3528: i18n format statements throw exceptions for missing keys
|
1 |
12 months
|
|
|
Review
|
CR-JAL-206
|
Mungo Carstairs
|
JAL-3412: ID margin for CDS and Protein views not equal when split...
|
6 |
12 months
|
|
|
Review
|
CR-JAL-207
|
Mungo Carstairs
|
JAL-3296: Changing sequence start should invalidate cursor
|
2 |
12 months
|
|
|
Review
|
CR-JAL-208
|
Mungo Carstairs
|
JAL-3468 truncate feature description to 40 chars in tooltip/menu item
|
7 |
11 months
|
|
|
Review
|
CR-JAL-209
|
Ben Soares
|
JAL-3543 Conditional reporting of Install4j and Getdown versions if...
|
2 |
11 months
|
|
|
Review
|
CR-JAL-210
|
Mungo Carstairs
|
JAL-3549: 'Undo' menu item is added for null Sort by Feature...
|
4 |
11 months
|
|
|
Review
|
CR-JAL-211
|
Mungo Carstairs
|
JAL-3579: Feature Editor dialog opens with 'Show Sequence Features'...
|
1 |
10 months
|
|
|
Review
|
CR-JAL-212
|
Ben Soares
|
JAL-3529 improved regex in Stockholm UNIPROT accession id test
|
1 |
10 months
|
|
|
Review
|
CR-JAL-213
|
Bob Hanson
|
new String(..) in setSequenceSetId()
|
1 |
10 months
|
|
|
Review
|
CR-JAL-214
|
Mungo Carstairs
|
JAL-3567: Genomic position shown in virtual feature tooltip
|
11 |
10 months
|
|
|