Closed
|
CR-JAL-64
|
Kira Mourão
|
JAL-2571 Corrected alignment width/height checks to visible only
|
5 |
3 years and 9 months
|
|
|
Closed
|
CR-JAL-65
|
Kira Mourão
|
JAL-2591 - hiddenColumns and thread safety for overview etc
|
25 |
3 years and 8 months
|
|
|
Closed
|
CR-JAL-66
|
Mungo Carstairs
|
JAL-2589: Gap colour set in dialog is not applied
|
8 |
3 years and 8 months
|
|
|
Closed
|
CR-JAL-67
|
Mungo Carstairs
|
JAL-2570: existing SequenceGroup loses colourscheme when resized in...
|
2 |
3 years and 8 months
|
|
|
Closed
|
CR-JAL-68
|
Kira Mourão
|
JAL-2600: Alignment flickers when resized
|
4 |
3 years and 8 months
|
|
|
Draft
|
CR-JAL-69
|
Mungo Carstairs
|
JAL-147: Scrolling wrapped alignment is unreliable
|
11 |
3 years and 8 months
|
|
|
Review
|
CR-JAL-70
|
Mungo Carstairs
|
JAL-147: Scrolling wrapped alignment is unreliable
|
13 |
3 years and 8 months
|
|
|
Review
|
CR-JAL-71
|
Mungo Carstairs
|
JAL-147: Scrolling wrapped alignment is unreliable
|
23 |
3 years and 7 months
|
|
|
Review
|
CR-JAL-72
|
Thomas van Aalten
|
Goal and implementation review for hmmer3 model import and...
|
79 |
3 years and 7 months
|
|
|
Review
|
CR-JAL-73
|
Thomas van Aalten
|
add partial button fix to annotation and statistics output
|
12 |
3 years and 7 months
|
|
|
Closed
|
CR-JAL-74
|
Mungo Carstairs
|
JAL-2542: DBRefFetcher.transferReferences incorrectly relocates...
|
6 |
3 years and 7 months
|
|
|
Closed
|
CR-JAL-75
|
Mungo Carstairs
|
JAL-2506 relocate Uniprot binding classes, bind to UniprotFeature not...
|
13 |
3 years and 7 months
|
|
|
Review
|
CR-JAL-76
|
Mungo Carstairs
|
JAL-2620: Support for alternative genetic code tables
|
12 |
3 years and 7 months
|
|
|
Closed
|
CR-JAL-77
|
Mungo Carstairs
|
JAL-2290 no update if no change of residue JAL-2547 no features on...
|
1 |
3 years and 7 months
|
|
|
Closed
|
CR-JAL-78
|
Kira Mourão
|
JAL-2611: Click-drag of visible area to allow fine adjustment
|
16 |
3 years and 7 months
|
|
|
Draft
|
CR-JAL-79
|
Mungo Carstairs
|
JAL-2630 update Overview/structure from graduated colour options...
|
2 |
3 years and 7 months
|
|
|
Review
|
CR-JAL-80
|
Mungo Carstairs
|
JAL-2630 update Overview/structure from graduated colour options...
|
2 |
3 years and 7 months
|
|
|
Closed
|
CR-JAL-81
|
Mungo Carstairs
|
JAL-2624 check feature colour threshold when colouring structure
|
1 |
3 years and 7 months
|
|
|
Review
|
CR-JAL-82
|
Jim Procter
|
JAL-2582: Cannot retrieve Ensembl peptide IDs with Ensembl fetcher
|
2 |
3 years and 6 months
|
|
|
Review
|
CR-JAL-83
|
Jim Procter
|
JAL-2291: Popup->hide insertions should operate on currently selected...
|
9 |
3 years and 6 months
|
|
|
Closed
|
CR-JAL-84
|
Kira Mourão
|
JAL-2665: NPE when selecting sequence ids and scrolling downwards
|
3 |
3 years and 6 months
|
|
|
Closed
|
CR-JAL-85
|
Mungo Carstairs
|
JAL-2608: Dispose of OverviewPanel to avoid memory leaks
|
5 |
3 years and 6 months
|
|
|
Closed
|
CR-JAL-86
|
Mungo Carstairs
|
JAL-2687: ConcurrentModificationException on closing applet alignment...
|
2 |
3 years and 6 months
|
|
|
Review
|
CR-JAL-87
|
Kira Mourão
|
JAL-2527: User preferences for overview window
|
15 |
3 years and 6 months
|
|
|
Review
|
CR-JAL-88
|
Mungo Carstairs
|
JAL-2704: Gap colour should not be affected by PID or Conservation...
|
2 |
3 years and 6 months
|
|
|
Closed
|
CR-JAL-89
|
Jim Procter
|
JAL-2673 Attempt to stop infinite scrolling etc
|
2 |
3 years and 5 months
|
|
|
Closed
|
CR-JAL-90
|
Mungo Carstairs
|
JAL-2728: Protein Annotation panel too high in CDS/Protein
|
2 |
3 years and 5 months
|
|
|
Review
|
CR-JAL-91
|
Mungo Carstairs
|
JAL-2745: Update www.ebi.ac.uk to https
|
3 |
3 years and 5 months
|
|
|
Closed
|
CR-JAL-93
|
Mungo Carstairs
|
JAL-2658 ensure features dropdown entries are unique
|
1 |
3 years and 5 months
|
|
|
Closed
|
CR-JAL-94
|
Mungo Carstairs
|
JAL-2524: Too wide a region can be rendered if hidden columns present
|
2 |
3 years and 5 months
|
|
|
Closed
|
CR-JAL-95
|
Mungo Carstairs
|
JAL-2643: No update on tab out of modified colour threshold field
|
2 |
3 years and 4 months
|
|
|
Review
|
CR-JAL-96
|
Mungo Carstairs
|
JAL-2216 remove alignment listener when Tree Panel is closed
|
1 |
3 years and 4 months
|
|
|
Closed
|
CR-JAL-97
|
Mungo Carstairs
|
JAL-2253 safer simpler resolution of identifiers using lookup...
|
8 |
3 years and 4 months
|
|
|
Closed
|
CR-JAL-98
|
Mungo Carstairs
|
JAL-2495 highlight all mapped sequences from structure pick
|
1 |
3 years and 4 months
|
|
|
Review
|
CR-JAL-99
|
Mungo Carstairs
|
JAL-2225: structure viewer doesn't get mappings for all chains when...
|
5 |
3 years and 4 months
|
|
|
Closed
|
CR-JAL-100
|
Mungo Carstairs
|
JAL-2667 tests added, update status bar and tooltip
|
4 |
3 years and 4 months
|
|
|
Review
|
CR-JAL-101
|
Mungo Carstairs
|
JAL-2492: Performant lookup of non-positional features
|
7 |
3 years and 4 months
|
|
|
Review
|
CR-JAL-102
|
Mungo Carstairs
|
JAL-2480: Encapsulate performant access to sequence features
|
31 |
3 years and 4 months
|
|
|
Closed
|
CR-JAL-103
|
Mungo Carstairs
|
JAL-2481: Performant lookup of features for rendering
|
10 |
3 years and 4 months
|
|
|
Closed
|
CR-JAL-104
|
Mungo Carstairs
|
JAL-2609: Implement fast paint of scrolled wrapped alignment
|
3 |
3 years and 4 months
|
|
|
Review
|
CR-JAL-105
|
Kira Mourão
|
JAL-2742: Out by one error in CigarArray constructor
|
3 |
3 years and 4 months
|
|
|
Closed
|
CR-JAL-106
|
Mungo Carstairs
|
JAL-2523: Handle HTTP 429 response for Ensembl queries
|
8 |
3 years and 4 months
|
|
|
Closed
|
CR-JAL-108
|
Jim Procter
|
JAL-2773 add new flag to...
|
54 |
3 years and 4 months
|
|
|
Review
|
CR-JAL-109
|
Jim Procter
|
JAL-2777: Exceptions and superposition failure when viewing PDB files...
|
4 |
3 years and 4 months
|
|
|
Closed
|
CR-JAL-110
|
Mungo Carstairs
|
JAL-2682: Sequence constructor is not thread safe
|
2 |
3 years and 4 months
|
|
|
Closed
|
CR-JAL-111
|
Mungo Carstairs
|
JAL-2727: Standalone test of memory recovery when all windows are...
|
11 |
3 years and 4 months
|
|
|
Review
|
CR-JAL-112
|
Jim Procter
|
JAL-2779: Dialog box sequencing broken on OSX
|
14 |
3 years and 4 months
|
|
|
Review
|
CR-JAL-113
|
Mungo Carstairs
|
JAL-2617: stop codons shown in CDS/Protein view from Ensembl locus...
|
4 |
3 years and 4 months
|
|
|
Closed
|
CR-JAL-114
|
Mungo Carstairs
|
JAL-2685: include start/end position of aligned region in pairwise...
|
5 |
3 years and 4 months
|
|
|
Review
|
CR-JAL-115
|
Kira Mourão
|
benchmarking platform
|
1 |
3 years and 4 months
|
|
|
Closed
|
CR-JAL-116
|
Mungo Carstairs
|
JAL-2598 Sequence.getSequence return a copy of the char array
|
29 |
3 years and 4 months
|
|
|