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CR-JAL-167 2

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    Participant Role Time Spent Comments Latest Comment
    Author 2m    
    Reviewer - Complete 13m 2 should really explain what path to classes is as well as ...
    Total   15m 2  
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    Objectives

    • JAL-3065
      Change in all repo documentation advising launching Jalview with the
      Djava.ext.dirs=LIB
      option to now use
      -classpath="LIB/*:..."
      instead. Using the -Djava.ext.dirs= option masks the JRE's own ext dir
      which contains the sunjce packages. This manifests as cipher problems
      when accessing https resources (in particular https://www.ebi.ac.uk/...
      when searching for PDB structures, activated when choosing Sequence
      >"3D
      Structure Data...")

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    Issues Raised From Comments

    Key Summary State Assignee
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    /.settings/org.eclipse.jdt.groovy.core.prefs Deleted
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    /help/html/features/commandline.html Changed 1
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    /src/jalview/bin/Jalview.java Changed 1
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    /test/.../bin/CommandLineOperations.java Changed
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    /utils/InstallAnywhere/README_IA Changed
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    /.gitignore Changed
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    /README Changed
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