CR-JAL-22 JAL-2405: Protein specific colours enabled in selected group colour menu for nucleotide alignment

closed on 31 Mar 17

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JAL-2405: Protein specific colours enabled in selected group colour menu for...

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Number of files included: 7

jalview 0
- Folder src/jalview 0
  - Folder appletgui 0
    - File APopupMenu.java 0 Remove
    - File AlignFrame.java 0 Remove
  - Folder datamodel 0
    - File SequenceGroup.java 3 Remove
  - Folder gui 0
    - File PopupMenu.java 0 Remove
  - Folder viewmodel 0
    - File AlignmentViewport.java 0 Remove
- Folder test/jalview 0
  - Folder datamodel 0
    - File SequenceGroupTest.java 0 Remove
  - Folder gui 0
    - File AlignViewportTest.java 0 Remove

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Participant	Role	Time Spent	Comments	Latest Comment
Mungo Carstairs	Author	25m	2	Added a further check, with a unit test, also in Alignmen...
Kira Mourão	Reviewer - Complete	9m	1	If it is possible to get a circular reference chain as in...
Total		34m	3

Linked Issue:
JAL-2405

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Objectives

1.Import a nucleotide alignment
2. make a selection
3. right click and Selection->new group->colour menu

At the very least, Conservation colouring should not be available since it is not computable for nucleotide sequences.

Branches in review

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Issues Raised From Comments

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CR-JAL-22

JAL-2405: Protein specific colours enabled in selected group colour menu for...

CR-JAL-22 3

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JAL-2405: Protein specific colours enabled in selected group colour menu for...

CR-JAL-22 3

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