Commits to JS-develop from 2nd to 25th June 2020

Activity

CR-JAL-232 9

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    Details

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    Participant Role Time Spent Comments Latest Comment
    Author      
    Reviewer - 28% reviewed 41m 9 Ah it does run when a column selection is made in a split...
    Total   41m 9  
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    Objectives

    All commits by Bob Hanson to Jalview-JS/develop, 2nd-25th June. There are a few additional commits of earlier date but this is the limit to the number of changesets allowed by Crucible.
    These are for a range of changes cherry-picked (or redone) from the JAL-3253-applet branch(es).

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    Issues Raised From Comments

    Key Summary State Assignee
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    General Comments

    Mungo Carstairs

    Due to the number of changes this is likely to be a 'best efforts' review.

    Due to the number of changes this is likely to be a 'best efforts' review.

    Mungo Carstairs

    Files added to doc folder: are this intended as working documents, or publish...

    Files added to doc folder: are this intended as working documents, or publishable documentation? Bearing in mind that that are findable on the web and a user might reasonably expect them to provide documentation.
    e.g. http://source.jalview.org/gitweb/?p=jalview.git;a=blob;f=doc/JalviewJS-startupParams.md;h=9ff33529b2dbc2da34d2a573ccf5d042194fbb0d;hb=refs/heads/Jalview-JS/develop

    /doc/JalviewJS-API.md Changed
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    /doc/JalviewJS-startupParams.md Added
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    /doc/JalviewJS-startupParams.xlsx Added
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    /j8lib/Jmol-15.1.3.jar Added
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    /src/jalview/.../scoremodels/ScoreModels.java Changed
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    /src/jalview/analysis/AlignmentSorter.java Changed
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    /src/jalview/analysis/CrossRef.java Changed
    /src/jalview/api/JalviewApp.java Deleted
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    /src/jalview/api/JalviewJSApi.java Added 1
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    /src/jalview/api/JalviewJSApp.java Deleted
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    /src/jalview/api/JalviewJSApp.java Deleted
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    /src/jalview/.../js/JSFunctionExec.java Added
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    /src/jalview/.../js/JalviewLiteJsApi.java Added
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    /src/jalview/appletgui/js/JsCallBack.java Added
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    /src/jalview/.../js/JsSelectionSender.java Added
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    /src/jalview/.../js/MouseOverListener.java Added
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    /src/.../js/MouseOverStructureListener.java Added
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    /src/jalview/appletgui/APopupMenu.java Changed
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    /src/jalview/appletgui/AlignFrame.java Changed
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    /src/jalview/appletgui/AlignViewport.java Changed
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    /src/.../appletgui/RedundancyPanel.java Changed
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    /src/jalview/appletgui/SeqPanel.java Changed
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    /src/jalview/appletgui/TreeCanvas.java Changed
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    /src/jalview/bin/AppletParams.java Changed
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    /src/jalview/bin/AppletParams.java Changed
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    /src/.../bin/ApplicationSingletonProvider.java Added
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    /src/jalview/bin/ArgsParser.java Changed
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    /src/jalview/bin/ArgsParser.java Changed
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    /src/jalview/bin/Cache.java Changed
    /src/jalview/bin/Jalview.java Changed
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    /src/jalview/bin/Jalview.java Changed
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    /src/jalview/bin/Jalview.java Changed
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    /src/jalview/bin/JalviewAppLoader.java Deleted
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    /src/jalview/bin/JalviewJS2.java Changed
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