CR-JAL-234 0
- Details
- Objectives
- General Comments 0
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- Number of files included: 42
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jalview
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resources/lang
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- File Messages.properties 0 Remove
- File Messages_es.properties 0 Remove
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src
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ext/edu/ucsf/rbvi/strucviz2
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- File ChimeraManager.java 0 Remove
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jalview
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api
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structures
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- File JalviewStructureDisplayI.java 0 Remove
- File AlignmentViewPanel.java 0 Remove
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structures
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appletgui
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- File AlignmentPanel.java 0 Remove
- File AppletJmol.java 0 Remove
- File AppletJmolBinding.java 0 Remove
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datamodel
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- File ColumnSelection.java 0 Remove
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ext
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jmol
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- File JalviewJmolBinding.java 0 Remove
- File JmolCommands.java 0 Remove
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pymol
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- File PymolCommands.java 0 Remove
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rbvi/chimera
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- File AtomSpecModel.java 0 Remove
- File ChimeraCommands.java 0 Remove
- File ChimeraXCommands.java 0 Remove
- File JalviewChimeraBinding.java 0 Remove
- File StructureCommands.java 0 Remove
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jmol
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gui
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- File AlignFrame.java 0 Remove
- File AlignmentPanel.java 0 Remove
- File AppJmol.java 0 Remove
- File AppJmolBinding.java 0 Remove
- File ChimeraViewFrame.java 0 Remove
- File JalviewChimeraBindingModel.java 0 Remove
- File PymolViewer.java 0 Remove
- File StructureViewerBase.java 0 Remove
- File ViewSelectionMenu.java 0 Remove
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jbgui
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- File GStructureViewer.java 0 Remove
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structure
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- File StructureCommandsBase.java 0 Remove
- File StructureCommandsI.java 0 Remove
- File StructureSelectionManager.java 0 Remove
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structures/models
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- File AAStructureBindingModel.java 0 Remove
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util
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- File StructureCommands.java 0 Remove
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api
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ext/edu/ucsf/rbvi/strucviz2
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test/jalview
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ext
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jmol
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- File JalviewJmolBindingTest.java 0 Remove
- File JmolCommandsTest.java 0 Remove
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pymol
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- File PymolCommandsTest.java 0 Remove
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rbvi/chimera
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- File AtomSpecModelTest.java 0 Remove
- File ChimeraCommandsTest.java 0 Remove
- File ChimeraXCommandsTest.java 0 Remove
- File JalviewChimeraBindingTest.java 0 Remove
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jmol
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structures/models
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- File AAStructureBindingModelTest.java 0 Remove
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ext
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utils/testnglibs
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- File testng-sources.jar 0 Remove
- File gradle.properties 0 Remove
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resources/lang
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Linked Issue:
JAL-3390
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Objectives
Would like the option to hide regions of 3d structure with no mapping to the visible region of the alignment.
This would allow the structure viewer display to match an alignment which has been restricted to a domain of interest.
Would like the option to either hide hidden mapped regions in structure viewer, or show gray (as at present).
Branches in review
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/resources/lang/Messages.properties
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/resources/lang/Messages_es.properties
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/src/ext/.../strucviz2/ChimeraManager.java
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/src/.../structures/JalviewStructureDisplayI.java
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/src/jalview/api/AlignmentViewPanel.java
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/src/jalview/appletgui/AlignmentPanel.java
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/src/jalview/appletgui/AppletJmol.java
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/src/.../appletgui/AppletJmolBinding.java
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/src/.../datamodel/ColumnSelection.java
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/src/jalview/.../jmol/JalviewJmolBinding.java
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/src/jalview/ext/jmol/JmolCommands.java
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/src/jalview/ext/pymol/PymolCommands.java
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/src/jalview/.../chimera/AtomSpecModel.java
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/src/jalview/.../chimera/ChimeraCommands.java
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/src/jalview/.../chimera/ChimeraXCommands.java
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/src/.../chimera/JalviewChimeraBinding.java
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/src/.../chimera/StructureCommands.java
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/src/jalview/gui/AlignFrame.java
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/src/jalview/gui/AlignmentPanel.java
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/src/jalview/gui/AppJmol.java
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/src/jalview/gui/AppJmolBinding.java
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/src/jalview/gui/ChimeraViewFrame.java
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/src/.../gui/JalviewChimeraBindingModel.java
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/src/jalview/gui/PymolViewer.java
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/src/jalview/gui/StructureViewerBase.java
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/src/jalview/gui/ViewSelectionMenu.java
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/src/jalview/jbgui/GStructureViewer.java
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/src/.../structure/StructureCommandsBase.java
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/src/.../structure/StructureCommandsI.java
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/src/.../structure/StructureSelectionManager.java
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/src/.../models/AAStructureBindingModel.java
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/src/jalview/util/StructureCommands.java
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/test/.../jmol/JalviewJmolBindingTest.java
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/test/jalview/.../jmol/JmolCommandsTest.java
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/test/jalview/.../pymol/PymolCommandsTest.java
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/test/.../chimera/AtomSpecModelTest.java
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/test/.../chimera/ChimeraCommandsTest.java
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/test/.../chimera/ChimeraXCommandsTest.java
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/test/.../chimera/JalviewChimeraBindingTest.java
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/test/.../models/AAStructureBindingModelTest.java
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/utils/testnglibs/testng-sources.jar
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/gradle.properties
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