JAL-3390: Option to hide unmapped residues in structure viewer

Activity

CR-JAL-234 0

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    Participant Role Time Spent Comments Latest Comment
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    Reviewer - 3% reviewed 2m    
    Total   2m 0  
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    Objectives

    Would like the option to hide regions of 3d structure with no mapping to the visible region of the alignment.
    This would allow the structure viewer display to match an alignment which has been restricted to a domain of interest.

    Would like the option to either hide hidden mapped regions in structure viewer, or show gray (as at present).

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    Issues Raised From Comments

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    /resources/lang/Messages.properties Changed
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    /src/ext/.../strucviz2/ChimeraManager.java Changed
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    /src/.../structures/JalviewStructureDisplayI.java Changed
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    /src/jalview/api/AlignmentViewPanel.java Changed
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    /src/jalview/appletgui/AlignmentPanel.java Changed
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    /src/jalview/appletgui/AppletJmol.java Changed
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    /src/.../appletgui/AppletJmolBinding.java Changed
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    /src/.../datamodel/ColumnSelection.java Changed
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    /src/jalview/.../jmol/JalviewJmolBinding.java Changed
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    /src/jalview/ext/jmol/JmolCommands.java Changed
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    /src/jalview/ext/pymol/PymolCommands.java Changed
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    /src/jalview/.../chimera/AtomSpecModel.java Deleted
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    /src/jalview/.../chimera/ChimeraCommands.java Changed
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    /src/.../chimera/JalviewChimeraBinding.java Changed
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    /src/.../chimera/StructureCommands.java Deleted
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    /src/jalview/gui/AlignFrame.java Changed
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    /src/jalview/gui/AlignmentPanel.java Changed
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    /src/jalview/gui/AppJmol.java Changed
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    /src/jalview/gui/AppJmolBinding.java Changed
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    /src/jalview/gui/ChimeraViewFrame.java Changed
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    /src/.../gui/JalviewChimeraBindingModel.java Changed
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    /src/jalview/gui/PymolViewer.java Changed
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    /src/jalview/gui/StructureViewerBase.java Changed
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    /src/jalview/gui/ViewSelectionMenu.java Changed
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    /src/jalview/jbgui/GStructureViewer.java Changed
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    /src/.../structure/StructureCommandsBase.java Added
    /src/.../structure/StructureCommandsI.java Changed
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    /src/.../structure/StructureSelectionManager.java Changed
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    /src/.../models/AAStructureBindingModel.java Changed
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    /src/jalview/util/StructureCommands.java Deleted
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    /test/.../jmol/JalviewJmolBindingTest.java Deleted
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    /test/jalview/.../jmol/JmolCommandsTest.java Changed
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    /test/jalview/.../pymol/PymolCommandsTest.java Changed
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    /test/.../chimera/AtomSpecModelTest.java Deleted
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    /test/.../chimera/ChimeraCommandsTest.java Changed
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    /test/.../chimera/ChimeraXCommandsTest.java Changed
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    /test/.../chimera/JalviewChimeraBindingTest.java Deleted
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    /test/.../models/AAStructureBindingModelTest.java Changed
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    /utils/testnglibs/testng-sources.jar Changed
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    /gradle.properties Changed
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