JAL-3692: Update ENA endpoint for EMBL/CDS sequence retrieval

Activity

CR-JAL-239 2

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    Participant Role Time Spent Comments Latest Comment
    Author 1m 1 changed
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    Total   1m 2  
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    Objectives

    The endpoint we currently use for fetching EMBL[CDS] is being retired on 5th August.
    https://www.ebi.ac.uk/about/news/service-news/retirement-old-ena-browser-5th-august-2020
    The path is hard coded in EBIFetchClient.buildUrl().

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    Issues Raised From Comments

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    /resources/lang/Messages.properties Changed
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    /resources/lang/Messages_es.properties Changed
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    /src/jalview/io/EmblFlatFile.java Added
    /src/jalview/util/MappingUtils.java Changed
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    /src/jalview/.../dbsources/EmblCdsSource.java Changed
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    /src/.../dbsources/EmblFlatfileSource.java Added 2
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    /src/jalview/ws/dbsources/EmblSource.java Changed
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    /src/jalview/.../dbsources/EmblXmlSource.java Changed
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    /src/jalview/ws/ebi/EBIFetchClient.java Changed
    /test/jalview/io/EmblFlatFileTest.java Added
    /test/jalview/io/J03321.embl.txt Added
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    /test/jalview/util/MappingUtilsTest.java Changed
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    /test/.../dbsources/EmblSourceTest.java Deleted
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    /test/.../dbsources/EmblXmlSourceTest.java Added
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    /test/jalview/.../ebi/EBIFetchClientTest.java Changed

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