JAL-1260: Import genbank file

Activity

CR-JAL-252 0

Keyboard shortcuts  
  • Summarize the review outcomes (optional)
     
    #permalink

    Details

    Warning: no files are visible, they have all been filtered.
    Participant Role Time Spent Comments Latest Comment
    Author      
    Reviewer - 0% reviewed      
    Total   0m 0  
    #permalink

    Objectives

    [Edited by Jim] - GenBank import would allow sequence and annotation data from a wide variety of data sources (such as DNADynamo) to be imported to Jalview.

    Branches in review

    #permalink

    Issues Raised From Comments

    Key Summary State Assignee
    #permalink

    General Comments

    There are no general comments on this review.
    /src/jalview/datamodel/DBRefSource.java Changed
    Open in IDE #permalink
    /src/jalview/.../genbank/GenBankFeature.java Added
    Open in IDE #permalink
    /src/jalview/.../genbank/GenBankLocation.java Added
    Open in IDE #permalink
    /src/.../genbank/GenBankLocationPoint.java Added
    Open in IDE #permalink
    /src/.../genbank/GenBankLocationRange.java Added
    Open in IDE #permalink
    /src/jalview/.../genbank/GenBankLocations.java Added
    Open in IDE #permalink
    /src/jalview/.../xdb/genbank/GenBankLocus.java Added
    Open in IDE #permalink
    /src/jalview/.../genbank/GenBankReference.java Added
    Open in IDE #permalink
    /src/jalview/.../genbank/GenBankSequence.java Added
    Open in IDE #permalink
    /src/jalview/.../genbank/GenBankSource.java Added
    Open in IDE #permalink
    /src/jalview/.../genbank/GenBankVersion.java Added
    Open in IDE #permalink
    /src/jalview/io/AppletFormatAdapter.java Changed
    Open in IDE #permalink
    /src/jalview/io/DnaUtils.java Added
    Open in IDE #permalink
    /src/jalview/io/EmblFlatFile.java Changed
    /src/jalview/io/EmblFlatFile.java Changed
    Open in IDE #permalink
    /src/jalview/io/FileFormat.java Changed
    Open in IDE #permalink
    /src/jalview/io/FileFormat.java Changed
    /src/jalview/io/FlatFile.java Added
    Open in IDE #permalink
    /src/jalview/io/FlatFile.java Added
    /src/jalview/io/GenBankFile.java Added
    /src/jalview/io/GenBankFile.java Added
    Open in IDE #permalink
    /src/jalview/io/GenBankFile.java Added
    Open in IDE #permalink
    /src/jalview/io/IdentifyFile.java Changed
    Open in IDE #permalink
    /src/jalview/io/IdentifyFile.java Changed
    /src/jalview/io/IdentifyFile.java Changed
    Open in IDE #permalink
    /src/jalview/util/DnaUtils.java Changed
    Open in IDE #permalink
    /src/jalview/util/DnaUtils.java Changed
    Open in IDE #permalink
    /test/jalview/io/EmblFlatFileTest.java Changed
    Open in IDE #permalink
    /test/jalview/io/EmblFlatFileTest.java Changed
    /test/jalview/io/FileFormatsTest.java Changed
    /test/jalview/io/FileFormatsTest.java Changed
    Open in IDE #permalink
    /test/jalview/io/GU324925.1.gb Added
    Open in IDE #permalink
    /test/jalview/io/GenBankFileTest.java Added
    Open in IDE #permalink
    /test/jalview/io/GenBankFileTest.java Added
    /test/jalview/io/GenBankTest.java Added
    Open in IDE #permalink
    /test/jalview/io/IdentifyFileTest.java Changed
    Open in IDE #permalink
    /test/jalview/io/IdentifyFileTest.java Changed
    Open in IDE #permalink
    /test/jalview/io/J03321.embl.txt Changed
    Open in IDE #permalink
    /test/jalview/io/J03321.embl.txt Changed
    Open in IDE #permalink
    /test/jalview/io/J03321.gb Added
    Open in IDE #permalink
    /test/jalview/io/J03321.gb Added
    Open in IDE #permalink
    /test/jalview/io/M92650.1.gb Added
    Open in IDE #permalink
    /test/jalview/io/NC_000011.10.gb Added
    Open in IDE #permalink
    /test/jalview/io/V00505.gb Added
    Open in IDE #permalink

    Review updated: Reload | Ignore | Collapse

    You cannot reload the review while writing a comment.

    Log time against